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Scientific Computing and Data / Mount Sinai Data Warehouse / Training, Tutorials, and Documentation

Understanding Electronic Health Record (EHR) Data

Principal Data Architect Timothy Quinn, PhD, has developed informative presentations on OMOP Vocabulary Tables and Electronic Health Record (EHR) Data in MSDW:

Mount Sinai’s Epic electronic health record (EHR) system constitutes the primary data source for the Mount Sinai Data Warehouse. Data are also loaded from other ancillary systems.

 

AIR•MS Training

Fall 2025 Training Sessions

 

Session 1: Getting Started with AIR·MS: Health Data Fundamentals

You will need to have prior access to Minerva and AIR·MS OMOP De-ID dataset to participate in certain areas of this training. If you don’t have yet, you can follow these steps (NB: to access SailPoint you will need to be connected to the Mount Sinai network either by being onsite or by using VPN):

  1. Check that you have an ISMMS (School Network) Account. If you don’t, you can request it on SailPoint by selecting “School Network Account”
  2. If you haven’t yet, request a Minerva Account filling out this form. Please note that if you are not a PI, your PI should provide approval via email
  3. Request access to AIR·MS OMOP De-ID dataset via SailPoint by selecting “AIR.MS Production MSDW OMOP De-ID (MSSM)”. A detailed how to guide can be found here.

More details of how to gain access can be found here: AIR‧MS: Getting Started | Scientific Computing and Data

 

Session 2: From ChatAI to AIR·MS: Leveraging Large Language Models

 

Session 3: Advanced AIR·MS: Multimodal Data 

  • Tuesday October 21 (10:00 am – 11:00 am) | Hybrid In-Person & Zoom 
  • RECORDING NOW AVAILABLE – Session 3: Multimodal Data
  • SLIDES NOW AVAILABLE HERE.

 

Spring 2025 Session: slides available here.

 

Application Training

*Please note: to watch training videos off-campus users must be on VPN. 

Tutorials

Each tool has a specific set of features and functions. Check out these tutorials for our software tools to assist you:

 

Documentation

 

Presentations

For MSDW-related presentation recordings and materials, see Presentations.

 

Reports

For publications, user reports, annual reports, and surveys, see Annual Reports and User Surveys.

Still having trouble? Submit a ticket and we will respond quickly.

 

We are supported by grant UL1TR004419 from the National Center for Advancing Translational Sciences, National Institutes of Health.