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Scientific Computing and Data / Mount Sinai Data Warehouse / COVID-19 Research Data Set

COVID-19 Electronic Health Record (EHR) Research Data Set

In March 2020, Mount Sinai Data Warehouse team created a near real-time de-identified COVID-19 data set. This data set has evolved to contain over 400 data elements and is updated weekly. The cohort includes patients with an encounter at a Mount Sinai facility who have been diagnosed with COVID-19, those who are under investigation for COVID-19, as well as those who have screened negative for COVID-19. The data set consists of multiple files (patient encounter, lab tests, medication administrations, diagnoses, vitals, radiology and immunizations) all of which are linked together using a masked medical record number and a unique patient encounter key.

 

Category Includes
Patient Encounters: Demographics Age, Sex, Race, Ethnicity, Zip Code, Preferred Language, Insurance
Patient Encounters: Outcomes Mortality, AKI, VTE, Stroke, AMI
Patient Encounters: Comorbidities Asthma, COPD, CKD, HTN, Obesity, DM, HIV, Smoking, Cancer, CAD, CHF, OSA, A Fib, Liver Disease, UC, Crohn’s
Patient Encounters: Encounter Encounter Type, Department, Location of Care, Admission, Discharge, ED, ICU, Inpatient (Non ICU)
Patient Encounters: Radiology Report Impressions Chest x-rays, Chest CT scans
Vital Signs BMI, Max Temp, Max Heart Rate, Min Heart Rate, Max Respiratory Rate, Min Respiratory Rate, Max Blood Pressure, Min Blood Pressure, Min O2 Saturation
Lab Tests SARS-CoV-2 PCR, Antibody Assay, IL-6, IL-8, IL-1 Beta, TNF Alpha, D-Dimer, Ferritin, LDH, Fibrinogen, C-Reactive Protein, Procalcitonin, WBC, RBC, Blood Culture, AST, ALT, Alk Phos, Na, K, Cl, Calcium, eGFR, Bun, Creatinine, Hemoglobin, Lymphocyte, Eosinophil, Basophil, Monocyte, Neutrophil, Platelet, Hematocrit, aCL Antibody, B2GPI Antibody, Phospholipid Antibody, ESR, Haptoglobin, HbA1c, Oxyhemoglobin, Deoxyhemoglobin, Methemoglobin, Haptoglobin, BNP, MCV, MCH, MCHC, MPV, PIT, PT, INR, Albumin, Uric Acid, Bilirubin, pH, Anion Gap, pCO2, pO2, HCO3, CK, KC-MB, Troponin I, Transfusion (RBC, plasma, Platelet), Influenza, RSV
Medication Administrations Tocilizumab, Remdesivir, Sarilumab, Hydroxychloroquine, Anakinra, Azithromycin, Rivaroxiban, Apixaban, Enoxaparin, tPA, Heparin, Etanercept, Nitric oxide, Dopamine, Vasopressin, Norepinephrine, Epinephrine, Milrinone, Dobutamine, Phenylephrine, Methylprednisolone, Prednisone, Dexamethasone, Betamethasone, Famotidine

Click here to view slides with more information on this COVID-19 de-identified data set

 

Download COVID-19 EHR Data Set

Researchers seeking a custom COVID-19 data set, requests are subject to a fee of $180/hour. Submit a request for custom data here.

 

 

Acknowledgements

Please acknowledge us in your manuscripts with the following:
“This work was supported in part through the computational and data resources and staff expertise provided by Scientific Computing and Data at the Icahn School of Medicine at Mount Sinai.”