Scientific Computing and Data / High Performance Computing / Minerva HPC Presentations
Minerva HPC Presentations
The Minerva High Performance Computing Fall Training has concluded. Recordings and slides from each session are available below.
Further training sessions will commence in Spring 2026. Please be sure to check back here for details when they are announced.
NEW – Minerva/HPC Spring Training 2026
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We will be holding 5 training sessions this Spring, every Thursday starting February 12, 2026, and ending March 12, 2026.
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All sessions will be offered in person (LOCATION TO BE ANNOUNCED).
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Zoom links for virtual attendees to register for each session are provided below.
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Upon registration, a zoom link will be sent for the specific training session.
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Minerva resources
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Account and logging in
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User software environment
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Preview of service on Minerva
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Globus file transfers
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Web server usage
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TSM archive service
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Posit Connect server
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LSF introduction and basic/helpful LSF commands
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Job submission and monitoring
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Parallel jobs (parallel processing and GPUs)
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Job Arrays and Self-scheduler
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DOs and DON’Ts
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What is a GPU
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GPU resources on Minerva
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User GPU/AI Software environment on Minerva
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Running GPU/AI jobs in LSF
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Introduction to Large Language Models (LLMs)
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Transformer Architecture
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Key LLM Models
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Training and Fine-Tuning LLMs
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Practical Implementation on GPUs
Minerva User Group – Training Sessions
Scientific Computing and Data (SCD) computational scientists provide both introductory and advanced training sessions on how to use the Minerva supercomputer effectively and efficiently. The times and locations will be announced on this website and through the Mount Sinai research email list. Our computational scientists are also available to answer questions by appointment or at the weekly Digital Concierge drop-in. Please see below for archived slides from past training sessions:
- February 26, 2026: Load Sharing Facility (LSF) Job Scheduler (powerpoint slides) (video recording)
- February 19, 2026: Essential Services on Minerva (powerpoint slides) (video recording)
- February 2, 2026: Introduction to Minerva (powerpoint slides) (video recording)
- October 14, 2025: Using Containers on Minerva and Accelerating Genome Analysis with Parabricks (powerpoint slides) (video recording)
- October 10, 2025: Introduction to Data Ark – Mount Sinai Data Commons (powerpoint slides) (video recording)
- October 7, 2025: Leveraging Large Language Models in Biomedical Research (powerpoint slides) (video recording)
- October 3, 2025: Access Minerva via web browser Open OnDemand (powerpoint slides) (video recording)
- September 30, 2025: Accelerating Biomedical Data Science with GPUs: Practical Approaches and Tools (powerpoint slides) (video recording)
- September 26, 2025: Introduction to GPU/AI resources on Minerva (powerpoint slides) (video recording)
- September 23, 2025: Load Sharing Facility (LSF) Job Scheduler (powerpoint slides) (video recording)
- September 19, 2025: Essential Services on Minerva (powerpoint slides) (video recording)
- September 16, 2025: Introduction to Minerva (powerpoint slides) (video recording)
Find slide presentations from past training sessions here.
Minerva User Group – Town Hall Meetings
The Minerva User Group (MUG) meets quarterly and on an as-needed basis to review computational and data usage statistics, in addition to providing advice on operational policies and plans. All scientists and researchers who use Minerva are encouraged to participate. Please see below for slides from recent meetings:
- May 2025 – Minerva/Data Ark Town Hall (powerpoint slides) (video recording)
- November 2024 – Minerva Town Hall (powerpoint slides) (video recording)
- April 2024 – Minerva Town Hall (powerpoint slides) (video recording)
Find slide presentations from past Minerva User Group Meetings here.
Minerva User Satisfaction Survey
The Minerva User Satisfaction Survey is issued in January each year to collect feedback from users. Previous results can be found below:
- 2024 Minerva User Survey Results and Comment Feedback
- 2023 Minerva User Survey Results and Comment Feedback
- 2023 Minerva Job Scheduler User Survey Results
Find past survey results here.
