The Ma’ayan Laboratory and the Mount Sinai Center for Bioinformatics hosted a virtual symposium on Thursday, August 11, 2022 that featured research projects of the 2022 summer undergraduate research fellows. Our Summer Research Training Program in Biomedical Big Data Science is a research intensive ten-week training program for undergraduate students interested in participating in cutting-edge research projects aimed at solving data-intensive biomedical problems. Summer fellows training in the Ma’ayan Laboratory at the Icahn School of Medicine at Mount Sinai conducted faculty-mentored independent research projects in the following areas: data harmonization, machine learning, cloud computing and dynamic data visualization.
Agenda
10:00 AM Introduction
10:05 AM Derek Wang
Cell Shooter: Interactive Viewer to Discover Targets and Drugs for Clusters of Patients
10:15 AM Eden Deng
Target Identification from RNA-seq of Senescent Cells and CPTAC3 Subtypes
10:25 AM David Lewis
Combined KEA3 and ChEA3 Analysis of the CPTAC3 Proteogenomics Data
10:35 AM Reid Fleishman
Processing the Tabula Sapiens Dataset for Data Integration and Knowledge Discovery
10:45 AM Clara Chen
The Dexamethasone Benchmarking Resource
10:55 AM Sophia Colmenares
Benchmarking Methods to Produce L1000 Consensus Signatures
11:05 AM Nhi Nguyen
The Enrichr Knowledge Graph
11:15 AM Hannah Qu
Updating the ChEA Transcription-Factor/Target Library
11:25 AM Lauren Druz
Knowledge Graph to Connect Labs based on the Genes and Diseases they Study
11:35 AM Cole Heine
Gene-Centric Integration, Harmonization, and Analysis of Common Fund Datasets
11:45 AM Sophie Goldman
RxPx: Dashboard and Appyter for Predicted Drug Properties
11:55 AM Jason Han
Boxplot Express: Interactive Exploration of Transcriptomics Datasets