Giotto is an R package that integrative spatial transcriptomics and multi-omics  data analysis and visualization and can be used in diverse technology platforms.

Click here for information about the latest version of Giotto (a.k.a. Giotto Suite).

Click here for information about the stable (but older) version of Giotto.

Giotto is described in the following publications.

  1. Dries R*†, Zhu Q*, Dong R, Eng CL, Li H, Liu K, Fu Y, Zhao T, Sarkar A, Bao F, George RE, Pierson N, Cai L, Yuan GC†. Giotto: a toolbox for integrative analysis and visualization of spatial expression data. Genome Biol. 2021 Mar 8;22(1):78. [ paper ]
  2. Del Rossi N*, Chen JG*, Yuan GC†, Dries R†. Analyzing Spatial Transcriptomics Data Using Giotto. Curr Protoc. 2022 Apr;2(4):e405. doi: 10.1002/cpz1.405. [ part 1 ][ part 2 ]