Integrating social determinants of health and genetic risk in disease risk models.

Biji A, Ferar K, Pejaver V, Kenny EE, Liu B, Asgari S.

Am J Hum Genet. 2026 Jul 2;113(7):1434-1447.

DOI: 10.1016/j.ajhg.2026.05.014 PMID: 42330952 PMCID: PMC13384252

A Genome-First Study of Familial Hypercholesterolemia Comparing African and European Ancestry Individuals.

Winters AH, Kelly MA, Syed MG, Bergquist T, Berry ASF, Mohammed N, Cawley D, Jones LK, Pejaver V, Gidding SS, Oetjens MT.

Circulation. 2026 Jun 16;153(24):1928-1939.

DOI: 10.1161/CIRCULATIONAHA.126.080694 PMID: 42212376 PMCID: PMC13225614

Calibration of in-frame indel variant effect predictors for clinical variant classification.

Abderrazzaq H, Singh M, Babb L, Bergquist T, Brenner SE, Pejaver V, O'Donnell-Luria A, Radivojac P; ClinGen Computational Working Group and ClinGen Variant Classification Working Group.

bioRxiv [Preprint]. 2026 Apr 18:2026.04.15.718599.

DOI: 10.64898/2026.04.15.718599 PMID: 42039470 PMCID: PMC13105015

Gene- and domain-aware calibration increases the clinical utility of variant effect predictors.

Chen Y, Fayer S, Jain S, Benazouz M, Sverchkov Y, Stone J, Sharma H, Bergquist T, Stewart R, Mooney SD, Craven M, Radivojac P, Starita LM, Fowler DM, Pejaver V.

bioRxiv [Preprint]. 2026 Mar 31:2026.02.17.706269.

DOI: 10.64898/2026.02.17.706269 PMID: 41756877 PMCID: PMC12934735

Automated machine learning of echocardiographic strain enables identification of early myocardial changes in pre-symptomatic TTR carriers.

Weigman A, Zhao W, Liao SL, Trivieri MG, Madiman S, Lerakis S, Kenny EE, Abul-Husn NS, Pejaver V, Kontorovich AR.

medRxiv [Preprint]. 2026 Mar 5:2026.03.04.26347545.

DOI: 10.64898/2026.03.04.26347545 PMID: 41867206 PMCID: PMC13004165

A scalable approach to resolving variants of uncertain significance.

Tejura M, Chen Y, McEwen AE, Stewart R, Sverchkov Y, Laval F, Woo I, Zeiberg D, Shen R, Fayer S, Stone J, Smith N, Casadei S, Wang ZR, Snyder MW, Capodanno BJ, Gupta P, Benazouz M, Jain S, Heidl S, Muffley L, Dong S, Hitz BC, Gabdank I, Lin K, Da EY, Best S, Grindstaff S, Reinhart D, Rodriguez-Salas L, Seid O, Vandi AJ, Wenman C, Wheelock MK, Pendyala S, Holmes D, Xu A, Hosokai A, Tixhon M, Reno C, Ewald JD, Spirohn-Fitzgerald K, Teelucksingh T, Hao T, Chen ZS, Haghighi M, Hamid AK, Miglietta EA, Weisbart E, Coppin G, Lambourne L, Gebbia M, Coté AG, van Loggerenberg W, Fawcett KM, Steiner RD, Johnsen JM, Stergachis AB, Iakoucheva LM, Singh S, Cimini BA, Roth FP, James RG; IGVF Coding Variants Focus Group; Vidal M, Taipale M, Carpenter AE, Calderwood MA, Craven M, Pejaver V, Rubin AF, Radivojac P, Fowler DM, Starita LM.

bioRxiv [Preprint]. 2026 Feb 23:2026.02.14.705848.

DOI: 10.64898/2026.02.14.705848 PMID: 41727046 PMCID: PMC12918978

Drivers of Diagnostic Delay in Mitochondrial Disease: Missed Recognition of Canonical Features.

Tinker RJ, Jacob N, Syed MG, Kelkar J, Donnelly C, Elsharkawi I, Ganesh J, Gelb BD, Pejaver V, Kozicz T, Morava E.

JIMD Rep. 2026 Jan 22;67(1):e70068.

DOI: 10.1002/jmd2.70068 PMID: 41586033 PMCID: PMC12827488

Developing a phenotype risk score for <i>TTR</i> V142I to capture undiagnosed variant transthyretin amyloidosis in health systems.

Sarkar D, Ferar KD, Syed MG, Bastarache LA, Kenny EE, Abul-Husn NS, Pejaver V, Kontorovich AR.

medRxiv [Preprint]. 2026 Jan 6:2026.01.05.26343489.

DOI: 10.64898/2026.01.05.26343489 PMID: 41542665 PMCID: PMC12803306

The IGVF catalog-from genetic variation to function.

Li D, Liu S, Assis PR, Li M, Dong S, Whaling I, Jolanki O, Kagda M, Zhang W, Macias-Velasco JF, Liu T, Cody S, Antonacci-Fulton L, Huang Y, Liu J, Montgomery MT, Zeiberg D, Jain S, Pejaver V, Bergquist T, Chen Y, Radivojac P, Gersbach CA, Sherpa RN, Castro CP, Boyle AP, Starita LM, Fowler DM, Ahituv N, Dey KK, Majoros WH, Reddy TE, Craven M, Sinha R, Sverchkov Y, Cai X, Nzima MZ, Calderwood MA, Rozowsky J, Gerstein M, Ma J, Yue F, Cherry JM, Love MI, Engreitz JM, Hitz BC, Wang T.

Nucleic Acids Res. 2026 Jan 6;54(D1):D1437-D1445.

DOI: 10.1093/nar/gkaf1341 PMID: 41359121 PMCID: PMC12807646

Extracting and calibrating evidence of variant pathogenicity from population biobank data.

Bhat V, Yu T, Brown L, Pejaver V, Lebo M, Harrison S, Cassa CA.

Am J Hum Genet. 2025 Aug 7;112(8):1805-1817.

DOI: 10.1016/j.ajhg.2025.06.012 PMID: 40639380 PMCID: PMC12401458

Calibration of additional computational tools expands ClinGen recommendation options for variant classification with PP3/BP4 criteria.

Bergquist T, Stenton SL, Nadeau EAW, Byrne AB, Greenblatt MS, Harrison SM, Tavtigian SV, O'Donnell-Luria A, Biesecker LG, Radivojac P, Brenner SE, Pejaver V; ClinGen Sequence Variant Interpretation Working Group.

Genet Med. 2025 Jun;27(6):101402.

DOI: 10.1016/j.gim.2025.101402 PMID: 40084623 PMCID: PMC12208618

Gene-based calibration of high- throughput functional assays for clinical variant classification.

Zeiberg D, Tejura M, McEwen AE, Fayer S, Pejaver V, Rubin AF, Starita LM, Fowler DM, O'Donnell-Luria A, Radivojac P.

bioRxiv [Preprint]. 2025 May 4:2025.04.29.651326.

DOI: 10.1101/2025.04.29.651326 PMID: 40654914 PMCID: PMC12248162

Critical assessment of missense variant effect predictors on disease-relevant variant data.

Rastogi R, Chung R, Li S, Li C, Lee K, Woo J, Kim DW, Keum C, Babbi G, Martelli PL, Savojardo C, Casadio R, Chennen K, Weber T, Poch O, Ancien F, Cia G, Pucci F, Raimondi D, Vranken W, Rooman M, Marquet C, Olenyi T, Rost B, Andreoletti G, Kamandula A, Peng Y, Bakolitsa C, Mort M, Cooper DN, Bergquist T, Pejaver V, Liu X, Radivojac P, Brenner SE, Ioannidis NM.

Hum Genet. 2025 Mar;144(2-3):281-293.

DOI: 10.1007/s00439-025-02732-2 PMID: 40113603 PMCID: PMC11976771

Evaluation of enzyme activity predictions for variants of unknown significance in Arylsulfatase A.

Jain S, Trinidad M, Nguyen TB, Jones K, Neto SD, Ge F, Glagovsky A, Jones C, Moran G, Wang B, Rahimi K, Çalıcı SZ, Cedillo LR, Berardelli S, Özden B, Chen K, Katsonis P, Williams A, Lichtarge O, Rana S, Pradhan S, Srinivasan R, Sajeed R, Joshi D, Faraggi E, Jernigan R, Kloczkowski A, Xu J, Song Z, Özkan S, Padilla N, de la Cruz X, Acuna-Hidalgo R, Grafmüller A, Barrón LTJ, Manfredi M, Savojardo C, Babbi G, Martelli PL, Casadio R, Sun Y, Zhu S, Shen Y, Pucci F, Rooman M, Cia G, Raimondi D, Hermans P, Kwee S, Chen E, Astore C, Kamandula A, Pejaver V, Ramola R, Velyunskiy M, Zeiberg D, Mishra R, Sterling T, Goldstein JL, Lugo- Martinez J, Kazi S, Li S, Long K, Brenner SE, Bakolitsa C, Radivojac P, Suhr D, Suhr T, Clark WT.

Hum Genet. 2025 Mar;144(2-3):295-308.

DOI: 10.1007/s00439-025-02731-3 PMID: 40055237 PMCID: PMC12122056

Evaluating predictors of kinase activity of STK11 variants identified in primary human non-small cell lung cancers.

Chen Y, Lee K, Woo J, Kim DW, Keum C, Babbi G, Casadio R, Martelli PL, Savojardo C, Manfredi M, Shen Y, Sun Y, Katsonis P, Lichtarge O, Pejaver V, Seward DJ, Kamandula A, Bakolitsa C, Brenner SE, Radivojac P, O'Donnell-Luria A, Mooney SD, Jain S.

Hum Genet. 2025 Mar;144(2-3):127-142.

DOI: 10.1007/s00439-025-02726-0 PMID: 39934475 PMCID: PMC11976797

CAGI6 ID panel challenge: assessment of phenotype and variant predictions in 415 children with neurodevelopmental disorders (NDDs).

Aspromonte MC, Del Conte A, Zhu S, Tan W, Shen Y, Zhang Y, Li Q, Wang MH, Babbi G, Bovo S, Martelli PL, Casadio R, Althagafi A, Toonsi S, Kulmanov M, Hoehndorf R, Katsonis P, Williams A, Lichtarge O, Xian S, Surento W, Pejaver V, Mooney SD, Sunderam U, Srinivasan R, Murgia A, Piovesan D, Tosatto SCE, Leonardi E.

Hum Genet. 2025 Mar;144(2-3):227-242.

DOI: 10.1007/s00439-024-02722-w PMID: 39786577 PMCID: PMC11976362

Assessment of the evidence yield for the calibrated PP3/BP4 computational recommendations.

Stenton SL, Pejaver V, Bergquist T, Biesecker LG, Byrne AB, Nadeau EAW, Greenblatt MS, Harrison SM, Tavtigian SV, Radivojac P, Brenner SE, O'Donnell- Luria A; ClinGen Sequence Variant Interpretation Working Group.

Genet Med. 2024 Nov;26(11):101213.

DOI: 10.1016/j.gim.2024.101213 PMID: 39030733 PMCID: PMC11560577

Critical assessment of variant prioritization methods for rare disease diagnosis within the rare genomes project.

Stenton SL, O'Leary MC, Lemire G, VanNoy GE, DiTroia S, Ganesh VS, Groopman E, O'Heir E, Mangilog B, Osei-Owusu I, Pais LS, Serrano J, Singer-Berk M, Weisburd B, Wilson MW, Austin-Tse C, Abdelhakim M, Althagafi A, Babbi G, Bellazzi R, Bovo S, Carta MG, Casadio R, Coenen PJ, De Paoli F, Floris M, Gajapathy M, Hoehndorf R, Jacobsen JOB, Joseph T, Kamandula A, Katsonis P, Kint C, Lichtarge O, Limongelli I, Lu Y, Magni P, Mamidi TKK, Martelli PL, Mulargia M, Nicora G, Nykamp K, Pejaver V, Peng Y, Pham THC, Podda MS, Rao A, Rizzo E, Saipradeep VG, Savojardo C, Schols P, Shen Y, Sivadasan N, Smedley D, Soru D, Srinivasan R, Sun Y, Sunderam U, Tan W, Tiwari N, Wang X, Wang Y, Williams A, Worthey EA, Yin R, You Y, Zeiberg D, Zucca S, Bakolitsa C, Brenner SE, Fullerton SM, Radivojac P, Rehm HL, O'Donnell-Luria A.

Hum Genomics. 2024 Apr 29;18(1):44.

DOI: 10.1186/s40246-024-00604-w PMID: 38685113 PMCID: PMC11057178

Association of HSD17B13 and PNPLA3 With Liver Enzymes and Fibrosis in Hispanic/Latino Individuals of Diverse Genetic Ancestries.

Rutledge SM, Soper ER, Ma N, Pejaver V, Friedman SL, Branch AD, Kenny EE, Belbin GM, Abul-Husn NS.

Clin Gastroenterol Hepatol. 2023 Sep;21(10):2578-2587.e11.

DOI: 10.1016/j.cgh.2022.12.025 PMID: 36610497

Recommended practices and ethical considerations for natural language processing-assisted observational research: A scoping review.

Fu S, Wang L, Moon S, Zong N, He H, Pejaver V, Relevo R, Walden A, Haendel M, Chute CG, Liu H.

Clin Transl Sci. 2023 Mar;16(3):398-411.

DOI: 10.1111/cts.13463 PMID: 36478394 PMCID: PMC10014687

Predicting decompression surgery by applying multimodal deep learning to patients' structured and unstructured health data.

Jujjavarapu C, Suri P, Pejaver V, Friedly J, Gold LS, Meier E, Cohen T, Mooney SD, Heagerty PJ, Jarvik JG.

BMC Med Inform Decis Mak. 2023 Jan 6;23(1):2.

DOI: 10.1186/s12911-022-02096-x PMID: 36609379 PMCID: PMC9824905

Multi-objective prioritization of genes for high-throughput functional assays towards improved clinical variant classification.

Chen Y, Jain S, Zeiberg D, Iakoucheva LM, Mooney SD, Radivojac P, Pejaver V.

Pac Symp Biocomput. 2023;28:323-334.

PMID: 36540988 PMCID: PMC10042589

Calibration of computational tools for missense variant pathogenicity classification and ClinGen recommendations for PP3/BP4 criteria.

Pejaver V, Byrne AB, Feng BJ, Pagel KA, Mooney SD, Karchin R, O'Donnell- Luria A, Harrison SM, Tavtigian SV, Greenblatt MS, Biesecker LG, Radivojac P, Brenner SE; ClinGen Sequence Variant Interpretation Working Group.

Am J Hum Genet. 2022 Dec 1;109(12):2163-2177.

DOI: 10.1016/j.ajhg.2022.10.013 PMID: 36413997 PMCID: PMC9748256

A Comparison of Natural Language Processing Methods for the Classification of Lumbar Spine Imaging Findings Related to Lower Back Pain.

Jujjavarapu C, Pejaver V, Cohen TA, Mooney SD, Heagerty PJ, Jarvik JG.

Acad Radiol. 2022 Mar;29 Suppl 3(Suppl 3):S188-S200.

DOI: 10.1016/j.acra.2021.09.005 PMID: 34862122 PMCID: PMC8917985

SARS-CoV-2 infection and COVID-19 severity in individuals with prior seasonal coronavirus infection.

Gombar S, Bergquist T, Pejaver V, Hammarlund NE, Murugesan K, Mooney S, Shah N, Pinsky BA, Banaei N.

Diagn Microbiol Infect Dis. 2021 Jun;100(2):115338.

DOI: 10.1016/j.diagmicrobio.2021.115338 PMID: 33610036 PMCID: PMC7871798

Inferring the molecular and phenotypic impact of amino acid variants with MutPred2.

Pejaver V, Urresti J, Lugo-Martinez J, Pagel KA, Lin GN, Nam HJ, Mort M, Cooper DN, Sebat J, Iakoucheva LM, Mooney SD, Radivojac P.

Nat Commun. 2020 Nov 20;11(1):5918.

DOI: 10.1038/s41467-020-19669-x PMID: 33219223 PMCID: PMC7680112

A predictive tool for identification of SARS-CoV-2 PCR-negative emergency department patients using routine test results.

Joshi RP, Pejaver V, Hammarlund NE, Sung H, Lee SK, Furmanchuk A, Lee HY, Scott G, Gombar S, Shah N, Shen S, Nassiri A, Schneider D, Ahmad FS, Liebovitz D, Kho A, Mooney S, Pinsky BA, Banaei N.

J Clin Virol. 2020 Aug;129:104502.

DOI: 10.1016/j.jcv.2020.104502 PMID: 32544861 PMCID: PMC7286235

Piloting a model-to-data approach to enable predictive analytics in health care through patient mortality prediction.

Bergquist T, Yan Y, Schaffter T, Yu T, Pejaver V, Hammarlund N, Prosser J, Guinney J, Mooney S.

J Am Med Inform Assoc. 2020 Jul 1;27(9):1393-1400.

DOI: 10.1093/jamia/ocaa083 PMID: 32638010 PMCID: PMC7526463

A survey-based analysis of the academic job market.

Fernandes JD, Sarabipour S, Smith CT, Niemi NM, Jadavji NM, Kozik AJ, Holehouse AS, Pejaver V, Symmons O, Bisson Filho AW, Haage A.

Elife. 2020 Jun 12;9:e54097.

DOI: 10.7554/eLife.54097 PMID: 32530420 PMCID: PMC7360372

Evaluation of the secondary use of electronic health records to detect seasonal, holiday- related, and rare events related to traumatic injury and poisoning.

Bergquist T, Pejaver V, Hammarlund N, Mooney SD, Mooney SJ.

BMC Public Health. 2020 Jan 13;20(1):46.

DOI: 10.1186/s12889-020-8153-7 PMID: 31931781 PMCID: PMC6958939

Assessment of predicted enzymatic activity of α-N- acetylglucosaminidase variants of unknown significance for CAGI 2016.

Clark WT, Kasak L, Bakolitsa C, Hu Z, Andreoletti G, Babbi G, Bromberg Y, Casadio R, Dunbrack R, Folkman L, Ford CT, Jones D, Katsonis P, Kundu K, Lichtarge O, Martelli PL, Mooney SD, Nodzak C, Pal LR, Radivojac P, Savojardo C, Shi X, Zhou Y, Uppal A, Xu Q, Yin Y, Pejaver V, Wang M, Wei L, Moult J, Yu GK, Brenner SE, LeBowitz JH.

Hum Mutat. 2019 Sep;40(9):1519-1529.

DOI: 10.1002/humu.23875 PMID: 31342580 PMCID: PMC7156275

Assessment of blind predictions of the clinical significance of BRCA1 and BRCA2 variants.

Cline MS, Babbi G, Bonache S, Cao Y, Casadio R, de la Cruz X, Díez O, Gutiérrez-Enríquez S, Katsonis P, Lai C, Lichtarge O, Martelli PL, Mishne G, Moles-Fernández A, Montalban G, Mooney SD, O'Conner R, Ootes L, Özkan S, Padilla N, Pagel KA, Pejaver V, Radivojac P, Riera C, Savojardo C, Shen Y, Sun Y, Topper S, Parsons MT, Spurdle AB, Goldgar DE; ENIGMA Consortium.

Hum Mutat. 2019 Sep;40(9):1546-1556.

DOI: 10.1002/humu.23861 PMID: 31294896 PMCID: PMC6744348

Assessing the performance of in silico methods for predicting the pathogenicity of variants in the gene CHEK2, among Hispanic females with breast cancer.

Voskanian A, Katsonis P, Lichtarge O, Pejaver V, Radivojac P, Mooney SD, Capriotti E, Bromberg Y, Wang Y, Miller M, Martelli PL, Savojardo C, Babbi G, Casadio R, Cao Y, Sun Y, Shen Y, Garg A, Pal D, Yu Y, Huff CD, Tavtigian SV, Young E, Neuhausen SL, Ziv E, Pal LR, Andreoletti G, Brenner SE, Kann MG.

Hum Mutat. 2019 Sep;40(9):1612-1622.

DOI: 10.1002/humu.23849 PMID: 31241222 PMCID: PMC6744287

Assessment of methods for predicting the effects of PTEN and TPMT protein variants.

Pejaver V, Babbi G, Casadio R, Folkman L, Katsonis P, Kundu K, Lichtarge O, Martelli PL, Miller M, Moult J, Pal LR, Savojardo C, Yin Y, Zhou Y, Radivojac P, Bromberg Y.

Hum Mutat. 2019 Sep;40(9):1495-1506.

DOI: 10.1002/humu.23838 PMID: 31184403 PMCID: PMC6744362

The sequencing and interpretation of the genome obtained from a Serbian individual.

Mohammed Ismail W, Pagel KA, Pejaver V, Zhang SV, Casasa S, Mort M, Cooper DN, Hahn MW, Radivojac P.

PLoS One. 2018 Dec 19;13(12):e0208901.

DOI: 10.1371/journal.pone.0208901 PMID: 30566479 PMCID: PMC6300249

Target site specificity and in vivo complexity of the mammalian arginylome.

Wang J, Pejaver VR, Dann GP, Wolf MY, Kellis M, Huang Y, Garcia BA, Radivojac P, Kashina A.

Sci Rep. 2018 Nov 1;8(1):16177.

DOI: 10.1038/s41598-018-34639-6 PMID: 30385798 PMCID: PMC6212499

Big Data in Public Health: Terminology, Machine Learning, and Privacy.

Mooney SJ, Pejaver V.

Annu Rev Public Health. 2018 Apr 1;39:95-112.

DOI: 10.1146/annurev-publhealth-040617-014208 PMID: 29261408 PMCID: PMC6394411

Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework.

Glusman G, Rose PW, Prlić A, Dougherty J, Duarte JM, Hoffman AS, Barton GJ, Bendixen E, Bergquist T, Bock C, Brunk E, Buljan M, Burley SK, Cai B, Carter H, Gao J, Godzik A, Heuer M, Hicks M, Hrabe T, Karchin R, Leman JK, Lane L, Masica DL, Mooney SD, Moult J, Omenn GS, Pearl F, Pejaver V, Reynolds SM, Rokem A, Schwede T, Song S, Tilgner H, Valasatava Y, Zhang Y, Deutsch EW.

Genome Med. 2017 Dec 18;9(1):113.

DOI: 10.1186/s13073-017-0509-y PMID: 29254494 PMCID: PMC5735928

Working toward precision medicine: Predicting phenotypes from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges.

Daneshjou R, Wang Y, Bromberg Y, Bovo S, Martelli PL, Babbi G, Lena PD, Casadio R, Edwards M, Gifford D, Jones DT, Sundaram L, Bhat RR, Li X, Pal LR, Kundu K, Yin Y, Moult J, Jiang Y, Pejaver V, Pagel KA, Li B, Mooney SD, Radivojac P, Shah S, Carraro M, Gasparini A, Leonardi E, Giollo M, Ferrari C, Tosatto SCE, Bachar E, Azaria JR, Ofran Y, Unger R, Niroula A, Vihinen M, Chang B, Wang MH, Franke A, Petersen BS, Pirooznia M, Zandi P, McCombie R, Potash JB, Altman RB, Klein TE, Hoskins RA, Repo S, Brenner SE, Morgan AA.

Hum Mutat. 2017 Sep;38(9):1182-1192.

DOI: 10.1002/humu.23280 PMID: 28634997 PMCID: PMC5600620

Missense variant pathogenicity predictors generalize well across a range of function-specific prediction challenges.

Pejaver V, Mooney SD, Radivojac P.

Hum Mutat. 2017 Sep;38(9):1092-1108.

DOI: 10.1002/humu.23258 PMID: 28508593 PMCID: PMC5561458

Physicochemical sequence characteristics that influence S-palmitoylation propensity.

Reddy KD, Malipeddi J, DeForte S, Pejaver V, Radivojac P, Uversky VN, Deschenes RJ.

J Biomol Struct Dyn. 2017 Aug;35(11):2337-2350.

DOI: 10.1080/07391102.2016.1217275 PMID: 27498722

When loss-of-function is loss of function: assessing mutational signatures and impact of loss-of-function genetic variants.

Pagel KA, Pejaver V, Lin GN, Nam HJ, Mort M, Cooper DN, Sebat J, Iakoucheva LM, Mooney SD, Radivojac P.

Bioinformatics. 2017 Jul 15;33(14):i389-i398.

DOI: 10.1093/bioinformatics/btx272 PMID: 28882004 PMCID: PMC5870554

REVEL: An Ensemble Method for Predicting the Pathogenicity of Rare Missense Variants.

Ioannidis NM, Rothstein JH, Pejaver V, Middha S, McDonnell SK, Baheti S, Musolf A, Li Q, Holzinger E, Karyadi D, Cannon-Albright LA, Teerlink CC, Stanford JL, Isaacs WB, Xu J, Cooney KA, Lange EM, Schleutker J, Carpten JD, Powell IJ, Cussenot O, Cancel-Tassin G, Giles GG, MacInnis RJ, Maier C, Hsieh CL, Wiklund F, Catalona WJ, Foulkes WD, Mandal D, Eeles RA, Kote-Jarai Z, Bustamante CD, Schaid DJ, Hastie T, Ostrander EA, Bailey-Wilson JE, Radivojac P, Thibodeau SN, Whittemore AS, Sieh W.

Am J Hum Genet. 2016 Oct 6;99(4):877-885.

DOI: 10.1016/j.ajhg.2016.08.016 PMID: 27666373 PMCID: PMC5065685

The Loss and Gain of Functional Amino Acid Residues Is a Common Mechanism Causing Human Inherited Disease.

Lugo-Martinez J, Pejaver V, Pagel KA, Jain S, Mort M, Cooper DN, Mooney SD, Radivojac P.

PLoS Comput Biol. 2016 Aug 26;12(8):e1005091.

DOI: 10.1371/journal.pcbi.1005091 PMID: 27564311 PMCID: PMC5001644

Position of Proline Mediates the Reactivity of S-Palmitoylation.

Khanal N, Pejaver V, Li Z, Radivojac P, Clemmer DE, Mukhopadhyay S.

ACS Chem Biol. 2015 Nov 20;10(11):2529-36.

DOI: 10.1021/acschembio.5b00429 PMID: 26255674

Draft Genome Sequence of Caedibacter varicaedens, a Kappa Killer Endosymbiont Bacterium of the Ciliate Paramecium biaurelia.

Suzuki H, Dapper AL, Jackson CE, Lee H, Pejaver V, Doak TG, Lynch M, Preer JR Jr.

Genome Announc. 2015 Nov 5;3(6):e01310-15.

DOI: 10.1128/genomeA.01310-15 PMID: 26543129 PMCID: PMC4645214

The structural and functional signatures of proteins that undergo multiple events of post- translational modification.

Pejaver V, Hsu WL, Xin F, Dunker AK, Uversky VN, Radivojac P.

Protein Sci. 2014 Aug;23(8):1077-93.

DOI: 10.1002/pro.2494 PMID: 24888500 PMCID: PMC4116656

Intrinsic Size Parameters for Palmitoylated and Carboxyamidomethylated Peptides.

Li Z, Dilger JM, Pejaver V, Smiley D, Arnold RJ, Mooney SD, Mukhopadhyay S, Radivojac P, Clemmer DE.

Int J Mass Spectrom. 2014 Jul 15;368:6-14.

DOI: 10.1016/j.ijms.2014.04.009 PMID: 26023288 PMCID: PMC4443490

GeneclusterViz: a tool for conserved gene cluster visualization, exploration and analysis.

Pejaver VR, An J, Rhee S, Bhan A, Choi JH, Liu B, Lee H, Brown PJ, Kysela D, Brun YV, Kim S.

Bioinformatics. 2012 Jun 1;28(11):1527-9.

DOI: 10.1093/bioinformatics/bts177 PMID: 22495752 PMCID: PMC3356842

Gene Cluster Profile Vectors: a method to infer functionally related gene sets by grouping proximity-based gene clusters.

Pejaver VR, Kim S.

BMC Genomics. 2011;12 Suppl 2(Suppl 2):S2.

DOI: 10.1186/1471-2164-12-S2-S2 PMID: 21989079 PMCID: PMC3194233

Functional and evolutionary insights from the genomes of three parasitoid Nasonia species.

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Science. 2010 Jan 15;327(5963):343-8.

DOI: 10.1126/science.1178028 PMID: 20075255 PMCID: PMC2849982