Kehrer T, Cupic A, Ye C, Yildiz S, Bouhaddou M, Crossland NA, Barrall EA, Cohen P, Tseng A, Çağatay T, Rathnasinghe R, Flores D, Jangra S, Alam F, Mena I, Aslam S, Saqi A, Rutkowska M, Ummadi MR, Pisanelli G, Richardson RB, Veit EC, Fabius JM, Soucheray M, Polacco BJ, Ak B, Marin A, Evans MJ, Swaney DL, Gonzalez-Reiche AS, Sordillo EM, van Bakel H, Simon V, Zuliani-Alvarez L, Fontoura BMA, Rosenberg BR, Krogan NJ, Martinez-Sobrido L, García-Sastre A, Miorin L
Impact of SARS-CoV-2 ORF6 and its variant polymorphisms on host responses and viral pathogenesis
Cell Host & Microbe 2023 Sep 20:S1931-3128(23)00328-1
Cohen P, DeGrace EJ, Danziger O, Patel RS, Barrall EA, Bobrowski T, Kehrer T, Cupic A, Miorin L, García-Sastre A, Rosenberg BR
Unambiguous detection of SARS- CoV-2 subgenomic mRNAs with single-cell RNA sequencing
Microbiology Spectrum 2023 Sep 7:e0077623
Prescott RA, Pankow AP, de Vries M, Crosse KM, Patel RS, Alu M, Loomis C, Torres V, Koralov S, Ivanova E, Dittmann M, Rosenberg BR
A comparative study of in vitro air-liquid interface culture models of the human airway epithelium evaluating cellular heterogeneity and gene expression at single cell resolution
Respiratory Research 2023 Aug 28;24(1):213
Higgins CA, Nilsson-Payant BE, Bonaventure B, Kurland AP, Ye C, Yaron TM, Johnson JL, Adhikary P, Golynker I, Panis M, Danziger O, Rosenberg BR, Cantley LC, Martínez-Sobrido L, tenOever B, Johnson JR
SARS-CoV-2 hijacks p38β/MAPK11 to promote virus replication
mBio 2023 Aug 31;14(4):e0100723
Sun T, Rosenberg BR, Chung H, Rice CM
Identification of ADAR1 p150 and p110 Associated Edit Sites
Methods in Molecular Biology 2023;2651:285-294.
Malle L, Patel RS, Martin-Fernandez M, Stewart OJ, Philippot Q, Buta S, Richardson A, Barcessat V, Taft J, Bastard P, Samuels J, Mircher C, Rebillat AS, Maillebouis L, Vilaire-Meunier M, Tuballes K, Rosenberg BR, Trachtman R, Casanova JL, Notarangelo LD, Gnjatic S, Bush D, Bogunovic D
Autoimmunity in Down’s syndrome via cytokines, CD4 T cells and CD11c+ B cells
Nature 2023 Mar;615(7951):305-314.
Gagliardi TB, Iverson E, DeGrace EJ, Rosenberg BR, Scull MA
Danziger O, Patel RS, DeGrace EJ, Rosen MR, Rosenberg BR
van der Heide V, Jangra S, Cohen P, Rathnasinghe R, Aslam S, Aydillo T, Geanon D, Handler D, Kelley G, Lee B, Rahman A, Dawson T, Qi J, D’Souza D, Kim-Schulze S, Panzer JK, Caicedo A, Kusmartseva I, Posgai AL, Atkinson MA, Albrecht RA, García-Sastre A, Rosenberg BR, Schotsaert M, Homann D
Nilsson-Payant BE, Uhl S, Grimont A, Doane AS, Cohen P, Patel RS, Higgins CA, Acklin JA, Bram Y, Chandar V, Blanco-Melo D, Panis M, Lim JK, Elemento O, Schwartz RE, Rosenberg BR, Chandwani R, tenOever BR
Sun T, Yu Y, Wu X, Acevedo A, Luo JD, Wang J, Schneider WM, Hurwitz B, Rosenberg BR, Chung H, Rice CM
Clijsters L, Hoencamp C, Calis JJA, Marzio A, Handgraaf SM, Cuitino MC, Rosenberg BR, Leone G, Pagano M
Cyclin F Controls Cell-Cycle Transcriptional Outputs by Directing the Degradation of the Three Activator E2Fs
Molecular Cell 2019 Jun 20;74(6):1264-1277.e7
Rosenberg BR, Depla M, Freije CA, Gaucher D, Mazouz S, Boisvert M, Bédard N, Bruneau J, Rice CM, Shoukry NH
Longitudinal transcriptomic characterization of the immune response to acute hepatitis C virus infection in patients with spontaneous viral clearance
PLoS Pathogens 2018 Sep 17;14(9):e1007290
Zhang SY, Clark NE, Freije CA, Pauwels E, Taggart AJ, Okada S, Mandel H, Garcia P, Ciancanelli MJ, Biran A, Lafaille FG, Tsumura M, Cobat A, Luo J, Volpi S, Zimmer B, Sakata S, Dinis A, Ohara O, Garcia Reino EJ, Dobbs K, Hasek M, Holloway SP, McCammon K, Hussong SA, DeRosa N, Van Skike CE, Katolik A, Lorenzo L, Hyodo M, Faria E, Halwani R, Fukuhara R, Smith GA, Galvan V, Damha MJ, Al-Muhsen S, Itan Y, Boeke JD, Notarangelo LD, Studer L, Kobayashi M, Diogo L, Fairbrother WG, Abel L, Rosenberg BR, Hart PJ, Etzioni A, Casanova JL
Inborn Errors of RNA Lariat Metabolism in Humans with Brainstem Viral Infection
Cell 2018 Feb 22;172(5):952-965.e18
Chung H, Calis JJA, Wu X, Sun T, Yu Y, Sarbanes SL, Dao Thi VL, Shilvock AR, Hoffmann HH, Rosenberg BR, Rice CM
Human ADAR1 Prevents Endogenous RNA from Triggering Translational Shutdown
Cell 2018 Feb 8;172(4):811-824.e14
Wu X, Dao Thi VL, Huang Y, Billerbeck E, Saha D, Hoffmann HH, Wang Y, Silva LAV, Sarbanes S, Sun T, Andrus L, Yu Y, Quirk C, Li M, MacDonald MR, Schneider WM, An X, Rosenberg BR, Rice CM
Intrinsic Immunity Shapes Viral Resistance of Stem Cells
Cell 2018 Jan 25;172(3):423-438.e25
Rosenberg BR, Freije CA, Imanaka N, Chen ST, Eitson JL, Caron R, Uhl SA, Zeremski M, Talal A, Jacobson IM, Rice CM, Schoggins JW
Genetic Variation at IFNL4 Influences Extrahepatic Interferon-Stimulated Gene Expression in Chronic HCV Patients
Journal of Infectious Diseases 2018 Jan 30;217(4):650-655
Kenney AD, Dowdle JA, Bozzacco L, McMichael TM, St Gelais C, Panfil AR, Sun Y, Schlesinger LS, Anderson MZ, Green PL, López CB, Rosenberg BR, Wu L, Yount JS
Human Genetic Determinants of Viral Diseases
Annual Review of Genetics 2017 Nov 27;51:241-263
Simon EP, Freije CA, Farber BA, Lalazar G, Darcy DG, Honeyman JN, Chiaroni-Clarke R, Dill BD, Molina H, Bhanot UK, La Quaglia MP, Rosenberg BR, Simon SM
Transcriptomic characterization of fibrolamellar hepatocellular carcinoma
Proceedings of the National Academy of Sciences USA 2015 Nov 3;112(44):E5916-25
Calis JJ, Rosenberg BR
Characterizing immune repertoires by high throughput sequencing: strategies and applications
Trends in Immunology 2014 Oct 8;35(12):581-590
Honeyman JN, Simon EP, Robine N, Chiaroni-Clarke R, Darcy DG, Lim II, Gleason CE, Murphy JM, Rosenberg BR, Teegan L, Takacs CN, Botero S, Belote R, Germer S, Emde AK, Vacic V, Bhanot U, LaQuaglia MP, Simon SM
Detection of a recurrent DNAJB1-PRKACA chimeric transcript in fibrolamellar hepatocellular carcinoma
Science 2014 Feb 28;343(6174):1010-4
Fritz EL, Rosenberg BR, Lay K, Mihailović A, Tuschl T, Papavasiliou FN
A comprehensive analysis of the effects of the deaminase AID on the transcriptome and methylome of activated B cells
Nature Immunology 2013 Jul;14(7):749-55
Rosenberg BR, Dewell S, Papavasiliou FN
Identifying mRNA editing deaminase targets by RNA-Seq
Methods in Molecular Biology 2011;718:103-19
Rosenberg BR, Hamilton CE, Mwangi MM, Dewell S, Papavasiliou FN
Transcriptome-wide sequencing reveals numerous APOBEC1 mRNA-editing targets in transcript 3′ UTRs
Nature Structural & Molecular Biology 2011 Feb;18(2):230-6
Mansour H, Laird ME, Saleh R, Casrouge A, Eldin NS, El Kafrawy S, Hamdy M, Decalf J, Rosenberg BR, Fontanet A, Abdel-Hamid M, Mohamed MK, Albert ML, Rafik M
Circulating plasmacytoid dendritic cells in acutely infected patients with hepatitis C virus genotype 4 are normal in number and phenotype
Journal of Infectious Diseases 2010 Dec 1;202(11):1671-5
Hamilton CE, Papavasiliou FN, Rosenberg BR
Diverse functions for DNA and RNA editing in the immune system
RNA Biology 2010 Mar-Apr;7(2):220-8
Rosenberg BR, Papavasiliou FN
Beyond SHM and CSR: AID and related cytidine deaminases in the host response to viral infection
Advances in Immunology 2007;94:215-44