Publications

Gagliardi TB, Iverson E, DeGrace EJ, Rosenberg BR, Scull MA
Current Protocols 2022 Jun;2(6).

 


Danziger O, Patel RS, DeGrace EJ, Rosen MR, Rosenberg BR

PLoS Pathogens 2022 Apr 14;18(4):e1010464.

 


van der Heide V, Jangra S, Cohen P, Rathnasinghe R, Aslam S, Aydillo T, Geanon D, Handler D, Kelley G, Lee B, Rahman A, Dawson T, Qi J, D’Souza D, Kim-Schulze S, Panzer JK, Caicedo A, Kusmartseva I, Posgai AL, Atkinson MA, Albrecht RA, García-Sastre A, Rosenberg BR, Schotsaert M, Homann D

Cell Reports 2022 Mar 15;38(11):110508

 


Nilsson-Payant BE, Uhl S, Grimont A, Doane AS, Cohen P, Patel RS, Higgins CA, Acklin JA, Bram Y, Chandar V, Blanco-Melo D, Panis M, Lim JK, Elemento O, Schwartz RE, Rosenberg BR, Chandwani R, tenOever BR

Journal of Virology 2021 Nov 9;95(23):e0125721

 


Sun T, Yu Y, Wu X, Acevedo A, Luo JD, Wang J, Schneider WM, Hurwitz B, Rosenberg BR, Chung H, Rice CM

Proceedings of the National Academy of Sciences USA 2021 Mar 23;118(12):e2021757118

 


Tomlinson JE, Wolfisberg R, Fahnøe U, Patel RS, Trivedi S, Kumar A, Sharma H, Nielsen L, McDonough SP, Bukh J, Tennant BC, Kapoor A, Rosenberg BR, Rice CM, Divers TJ, Van de Walle GR, Scheel TKH
Hepatology 2021 Sep;74(3):1148–1163

 


Patel RS, Tomlinson JE, Divers TJ, Van de Walle GR, Rosenberg BR
BMC Biology 2021 Jan 22;19(1):13

 


Harman RM, Patel RS, Fan JC, Park JE, Rosenberg BR, Van de Walle GR
Stem Cell Research & Therapy 2020 Dec 4;11(1):524

 


Daniloski Z, Jordan TX, Wessels H-H, Hoagland DA, Kasela S, Legut M, Maniatis S, Mimitou EP, Lu L, Geller E, Danziger O, Rosenberg BR, Phatnani H, Smibert P, Lappalainen T, tenOever BR, Sanjana NE
Cell 2021 Jan 7;184(1):92-105.e16

 


Miorin L, Kehrer T, Sanchez-Aparicio MT, Zhang K, Cohen P, Patel RS, Cupic A, Makio T, Mei M, Moreno E, Danziger O, White KM, Rathnasinghe R, Uccellini M, Gao S, Aydillo T, Mena I, Yin X, Martin-Sancho L, Krogan NJ, Chanda SK, Schotsaert M, Wozniak RW, Ren Y, Rosenberg BR, Fontoura BMA, García-Sastre A
Proceedings of the National Academy of Sciences USA 2020 Nov 10;117(45):28344–28354.

 


Gruber CN, Calis JJA, Buta S, Evrony G, Martin JC, Uhl SA, Caron R, Jarchin L, Dunkin D, Phelps R, Webb BD, Saland JM, Merad M, Orange JS, Mace EM, Rosenberg BR, Gelb BD, Bogunovic D
Immunity 2020 Sep 15;53(3):672-684.e11

 


Tomlinson JE, Wolfisberg R, Fahnøe U, Sharma H, Renshaw RW, Nielsen L, Nishiuchi E, Holm C, Dubovi E, Rosenberg BR, Tennant BC, Bukh J, Kapoor A, Divers TJ, Rice CM, Van de Walle GR, Scheel TKH
PLoS Pathogens 2020 Jul;16(7):e1008677

 


Ho JSY, Angel M, Ma Y, Sloan E, Wang G, Martinez-Romero C, Alenquer M, Roudko V, Chung L, Zheng S, Chang M, Fstkchyan Y, Clohisey S, Dinan AM, Gibbs J, Gifford R, Shen R, Gu Q, Irigoyen N, Campisi L, Huang C, Zhao N, Jones JD, van Knippenberg I, Zhu Z, Moshkina N, Meyer L, Noel J, Peralta Z, Rezelj V, Kaake R, Rosenberg BR, Wang B, Wei J, Paessler S, Wise HM, Johnson J, Vannini A, Amorim MJ, Baillie JK, Miraldi ER, Benner C, Brierley I, Digard P, Łuksza M, Firth AE, Krogan N, Greenbaum BD, MacLeod MK, van Bakel H, Garcìa-Sastre A, Yewdell JW, Hutchinson E, Marazzi I
Cell 2020 Jun 25;181(7):1502-1517.e23

 


Seifert LL, Si C, Saha D, Sadic M, de Vries M, Ballentine S, Briley A, Wang G, Valero-Jimenez AM, Mohamed A, Schaefer U, Moulton HM, García-Sastre A, Tripathi S, Rosenberg BR, Dittmann M
PLoS Pathogens 2019 Nov 4;15(11):e1007634.

 


Clijsters L, Hoencamp C, Calis JJA, Marzio A, Handgraaf SM, Cuitino MC, Rosenberg BR, Leone G, Pagano M
Cyclin F Controls Cell-Cycle Transcriptional Outputs by Directing the Degradation of the Three Activator E2Fs
Molecular Cell 2019 Jun 20;74(6):1264-1277.e7


Rosenberg BR, Depla M, Freije CA, Gaucher D, Mazouz S, Boisvert M, Bédard N, Bruneau J, Rice CM, Shoukry NH
Longitudinal transcriptomic characterization of the immune response to acute hepatitis C virus infection in patients with spontaneous viral clearance
PLoS Pathogens 2018 Sep 17;14(9):e1007290


Zhang SY, Clark NE, Freije CA, Pauwels E, Taggart AJ, Okada S, Mandel H, Garcia P, Ciancanelli MJ, Biran A, Lafaille FG, Tsumura M, Cobat A, Luo J, Volpi S, Zimmer B, Sakata S, Dinis A, Ohara O, Garcia Reino EJ, Dobbs K, Hasek M, Holloway SP, McCammon K, Hussong SA, DeRosa N, Van Skike CE, Katolik A, Lorenzo L, Hyodo M, Faria E, Halwani R, Fukuhara R, Smith GA, Galvan V, Damha MJ, Al-Muhsen S, Itan Y, Boeke JD, Notarangelo LD, Studer L, Kobayashi M, Diogo L, Fairbrother WG, Abel L, Rosenberg BR, Hart PJ, Etzioni A, Casanova JL
Inborn Errors of RNA Lariat Metabolism in Humans with Brainstem Viral Infection
Cell 2018 Feb 22;172(5):952-965.e18


Chung H, Calis JJA, Wu X, Sun T, Yu Y, Sarbanes SL, Dao Thi VL, Shilvock AR, Hoffmann HH, Rosenberg BR, Rice CM
Human ADAR1 Prevents Endogenous RNA from Triggering Translational Shutdown
Cell 2018 Feb 8;172(4):811-824.e14


Wu X, Dao Thi VL, Huang Y, Billerbeck E, Saha D, Hoffmann HH, Wang Y, Silva LAV, Sarbanes S, Sun T, Andrus L, Yu Y, Quirk C, Li M, MacDonald MR, Schneider WM, An X, Rosenberg BR, Rice CM
Intrinsic Immunity Shapes Viral Resistance of Stem Cells
Cell 2018 Jan 25;172(3):423-438.e25


Rosenberg BR, Freije CA, Imanaka N, Chen ST, Eitson JL, Caron R, Uhl SA, Zeremski M, Talal A, Jacobson IM, Rice CM, Schoggins JW
Genetic Variation at IFNL4 Influences Extrahepatic Interferon-Stimulated Gene Expression in Chronic HCV Patients
Journal of Infectious Diseases 2018 Jan 30;217(4):650-655


Kenney AD, Dowdle JA, Bozzacco L, McMichael TM, St Gelais C, Panfil AR, Sun Y, Schlesinger LS, Anderson MZ, Green PL, López CB, Rosenberg BR, Wu L, Yount JS
Human Genetic Determinants of Viral Diseases
Annual Review of Genetics 2017 Nov 27;51:241-263


Simon EP, Freije CA, Farber BA, Lalazar G, Darcy DG, Honeyman JN, Chiaroni-Clarke R, Dill BD, Molina H, Bhanot UK, La Quaglia MP, Rosenberg BR, Simon SM
Transcriptomic characterization of fibrolamellar hepatocellular carcinoma
Proceedings of the National Academy of Sciences USA 2015 Nov 3;112(44):E5916-25


Calis JJ, Rosenberg BR
Characterizing immune repertoires by high throughput sequencing: strategies and applications
Trends in Immunology 2014 Oct 8;35(12):581-590


Honeyman JN, Simon EP, Robine N, Chiaroni-Clarke R, Darcy DG, Lim II, Gleason CE, Murphy JM, Rosenberg BR, Teegan L, Takacs CN, Botero S, Belote R, Germer S, Emde AK, Vacic V, Bhanot U, LaQuaglia MP, Simon SM
Detection of a recurrent DNAJB1-PRKACA chimeric transcript in fibrolamellar hepatocellular carcinoma
Science 2014 Feb 28;343(6174):1010-4


Fritz EL, Rosenberg BR, Lay K, Mihailović A, Tuschl T, Papavasiliou FN
A comprehensive analysis of the effects of the deaminase AID on the transcriptome and methylome of activated B cells
Nature Immunology 2013 Jul;14(7):749-55


Rosenberg BR, Dewell S, Papavasiliou FN
Identifying mRNA editing deaminase targets by RNA-Seq
Methods in Molecular Biology 2011;718:103-19


Rosenberg BR, Hamilton CE, Mwangi MM, Dewell S, Papavasiliou FN
Transcriptome-wide sequencing reveals numerous APOBEC1 mRNA-editing targets in transcript 3′ UTRs
Nature Structural & Molecular Biology 2011 Feb;18(2):230-6


Mansour H, Laird ME, Saleh R, Casrouge A, Eldin NS, El Kafrawy S, Hamdy M, Decalf J, Rosenberg BR, Fontanet A, Abdel-Hamid M, Mohamed MK, Albert ML, Rafik M
Circulating plasmacytoid dendritic cells in acutely infected patients with hepatitis C virus genotype 4 are normal in number and phenotype
Journal of Infectious Diseases 2010 Dec 1;202(11):1671-5


Hamilton CE, Papavasiliou FN, Rosenberg BR
Diverse functions for DNA and RNA editing in the immune system
RNA Biology 2010 Mar-Apr;7(2):220-8


Rosenberg BR, Papavasiliou FN
Beyond SHM and CSR: AID and related cytidine deaminases in the host response to viral infection
Advances in Immunology 2007;94:215-44