[et_pb_section bb_built=”1″ _builder_version=”3.0.47″ next_background_color=”#000000″][et_pb_row admin_label=”team” custom_margin=”||-50px|” _builder_version=”3.19.10″ use_custom_gutter=”on” gutter_width=”2″][et_pb_column type=”4_4″][et_pb_text admin_label=”Resources Title – Phone + Tablet width version” _builder_version=”3.19.10″ text_orientation=”center”]<\/p>\n
[\/et_pb_text][\/et_pb_column][\/et_pb_row][et_pb_row _builder_version=”3.19.10″ background_size=”initial” background_position=”top_left” background_repeat=”repeat” width_unit=”off” custom_width_percent=”60%” custom_margin=”||0px|” custom_padding=”||0px|” make_fullwidth=”on” use_custom_gutter=”on” gutter_width=”2″ disabled=”off” disabled_on=”||on”][et_pb_column type=”4_4″][et_pb_text admin_label=”Text – %91Phone + Tablet width version%93″ _builder_version=”3.19.10″]<\/p>\n
A list of resources worth checking out, including those we have found helpful to our research.<\/p>\n
[\/et_pb_text][et_pb_text admin_label=”Text – Allen Institute” _builder_version=”3.19.10″ module_class=”centered-text” custom_margin=”|||5%” text_font_size=”14px”]<\/p>\n
Allen Institute Atlases,\u00a0<\/strong>portal.brain-map.org<\/a> [\/et_pb_text][et_pb_text admin_label=”Text – iDISCO website” _builder_version=”3.19.10″ module_class=”centered-text” custom_margin=”|||5%” text_font_size=”14px”]<\/p>\n iDisco Website,<\/strong> idisco.info<\/a> [\/et_pb_text][et_pb_text admin_label=”Text – ClearMap\/TubeMap” _builder_version=”3.19.10″ module_class=”centered-text” custom_margin=”|||5%” text_font_size=”14px”]<\/p>\n ClearMap & TubeMap Pipelines,\u00a0<\/strong>idisco.info\/clearmap-2<\/a> [\/et_pb_text][et_pb_text admin_label=”Text – MouseLight” _builder_version=”3.19.10″ module_class=”centered-text” custom_margin=”|||5%” text_font_size=”14px”]<\/p>\n MouseLight Neuron Browser,<\/strong>\u00a0ml-neuronbrowser.janelia.org<\/a> [\/et_pb_text][et_pb_text admin_label=”Text – Scalable Brain Atlas” _builder_version=”3.19.10″ module_class=”centered-text” custom_margin=”|||5%” text_font_size=”14px”]<\/p>\n Scalable Brain Atlas, <\/strong>scalablebrainatlas.incf.org<\/a>\u00a0<\/strong> [\/et_pb_text][et_pb_text admin_label=”Text – Paxinos Marmoset Brain Atlas” _builder_version=”3.19.10″ module_class=”centered-text” custom_margin=”|||5%” text_font_size=”14px”]<\/p>\n Marmoset Brain Atlases, <\/strong>www.marmosetbrain.org\/reference<\/a> [\/et_pb_text][et_pb_text _builder_version=”3.19.10″ text_font_size=”14px” \/][\/et_pb_column][\/et_pb_row][et_pb_row _builder_version=”3.19.10″ background_size=”initial” background_position=”top_left” background_repeat=”repeat” use_custom_width=”on” width_unit=”off” custom_width_percent=”60%” custom_margin=”||0px|” custom_padding=”||0px|” disabled=”off” disabled_on=”on|on|”][et_pb_column type=”4_4″][et_pb_text admin_label=”Text – %91Desktop width version%93″ _builder_version=”3.19.10″]<\/p>\n A list of resources worth checking out, including those we have found helpful to our research.<\/p>\n [\/et_pb_text][et_pb_text admin_label=”Text – Allen Institute” _builder_version=”3.19.10″ module_class=”centered-text” custom_margin=”|||5%” text_font_size=”14px”]<\/p>\n Allen Institute Atlases,\u00a0<\/strong>portal.brain-map.org<\/a> [\/et_pb_text][et_pb_text admin_label=”Text – iDISCO website” _builder_version=”3.19.10″ module_class=”centered-text” custom_margin=”|||5%” text_font_size=”14px”]<\/p>\n iDisco Website,<\/strong> idisco.info<\/a> [\/et_pb_text][et_pb_text admin_label=”Text – ClearMap\/TubeMap” _builder_version=”3.19.10″ module_class=”centered-text” custom_margin=”|||5%” text_font_size=”14px”]<\/p>\n ClearMap & TubeMap Pipelines,\u00a0<\/strong>idisco.info\/clearmap-2<\/a> [\/et_pb_text][et_pb_text admin_label=”Text – MouseLight” _builder_version=”3.19.10″ module_class=”centered-text” custom_margin=”|||5%” text_font_size=”14px”]<\/p>\n MouseLight Neuron Browser,<\/strong>\u00a0ml-neuronbrowser.janelia.org<\/a> [\/et_pb_text][et_pb_text admin_label=”Text – Scalable Brain Atlas” _builder_version=”3.19.10″ module_class=”centered-text” custom_margin=”|||5%” text_font_size=”14px”]<\/p>\n Scalable Brain Atlas, <\/strong>scalablebrainatlas.incf.org<\/a>\u00a0<\/strong> [\/et_pb_text][et_pb_text admin_label=”Text – Paxinos Marmoset Brain Atlas” _builder_version=”3.19.10″ module_class=”centered-text” custom_margin=”|||5%” text_font_size=”14px”]<\/p>\n Marmoset Brain Atlases, <\/strong>www.marmosetbrain.org\/reference<\/a> [\/et_pb_text][et_pb_text _builder_version=”3.19.10″ text_font_size=”14px” \/][\/et_pb_column][\/et_pb_row][\/et_pb_section][et_pb_section bb_built=”1″ _builder_version=”3.19.10″ background_color=”#000000″ border_width_all=”0.5px” border_color_bottom=”#00aeef” prev_background_color=”#ffffff”][et_pb_row _builder_version=”3.19.10″ custom_margin=”30px||20px|” custom_padding=”0px||0px|”][et_pb_column type=”1_2″][et_pb_text admin_label=”Lab contact info” _builder_version=”3.19.10″ background_layout=”dark”]<\/p>\n Laboratory of Neural Systems, Structures and Genetics<\/strong> [\/et_pb_text][\/et_pb_column][et_pb_column type=”1_2″][\/et_pb_column][\/et_pb_row][\/et_pb_section]<\/p>\n","protected":false},"excerpt":{"rendered":" Resources A list of resources worth checking out, including those we have found helpful to our research. Allen Institute Atlases,\u00a0portal.brain-map.orgA variety of extensive atlases for the developing and adult mouse and human brains. The atlases we use most frequently are the\u00a0Allen Brain Reference Atlas, and the\u00a0In-Situ Hybridization database. iDisco Website, idisco.infoUp-to-date protocols and resources for […]<\/p>\n","protected":false},"author":402,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_et_pb_use_builder":"on","_et_pb_old_content":"","_et_gb_content_width":"","footnotes":""},"class_list":["post-439","page","type-page","status-publish","hentry"],"aioseo_notices":[],"_links":{"self":[{"href":"https:\/\/labs.icahn.mssm.edu\/zhuhaowu-lab\/wp-json\/wp\/v2\/pages\/439","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/labs.icahn.mssm.edu\/zhuhaowu-lab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/labs.icahn.mssm.edu\/zhuhaowu-lab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/zhuhaowu-lab\/wp-json\/wp\/v2\/users\/402"}],"replies":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/zhuhaowu-lab\/wp-json\/wp\/v2\/comments?post=439"}],"version-history":[{"count":25,"href":"https:\/\/labs.icahn.mssm.edu\/zhuhaowu-lab\/wp-json\/wp\/v2\/pages\/439\/revisions"}],"predecessor-version":[{"id":534,"href":"https:\/\/labs.icahn.mssm.edu\/zhuhaowu-lab\/wp-json\/wp\/v2\/pages\/439\/revisions\/534"}],"wp:attachment":[{"href":"https:\/\/labs.icahn.mssm.edu\/zhuhaowu-lab\/wp-json\/wp\/v2\/media?parent=439"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}
A variety of extensive atlases for the developing and adult mouse and human brains. The atlases we use most frequently are the\u00a0Allen Brain Reference Atlas<\/a>, and the\u00a0In-Situ Hybridization database<\/a>.<\/p>\n
<\/strong>Up-to-date protocols and resources for using the iDisco method for tissue clearing and immunolabeling.\u00a0<\/p>\n
<\/strong>ClearMap is a software platform used to perform analysis of 3D mouse brain datasets obtained with iDISCO. TubeMap is a similar pipeline for performing brain vascular reconstruction.<\/p>\n
<\/strong>Database of complete single-neuron reconstructions at sub-micron resolution from Janelia. Many of the brains used to produce this data were prepared in our lab.<\/p>\n
<\/strong>Comparative atlases, useful for comparing gross brain architecture of mouse, rat, marmoset, macaque, human, etc.<\/p>\n
<\/strong>PDF download available of commonly used Paxinos atlas,\u201cThe Marmoset Brain in Stereotaxic Coordinates\u201d\u00a0<\/i><\/p>\n
A variety of extensive atlases for the developing and adult mouse and human brains. The atlases we use most frequently are the\u00a0Allen Brain Reference Atlas<\/a>, and the\u00a0In-Situ Hybridization database<\/a>.<\/p>\n
<\/strong>Up-to-date protocols and resources for using the iDisco method for tissue clearing and immunolabeling.\u00a0<\/p>\n
<\/strong>ClearMap is a software platform used to perform analysis of 3D mouse brain datasets obtained with iDISCO. TubeMap is a similar pipeline for performing brain vascular reconstruction.<\/p>\n
<\/strong>Database of complete single-neuron reconstructions at sub-micron resolution from Janelia. Many of the brains used to produce this data were prepared in our lab.<\/p>\n
<\/strong>Comparative atlases, useful for comparing gross brain architecture of mouse, rat, marmoset, macaque, human, etc.<\/p>\n
<\/strong>PDF download available of commonly used Paxinos atlas,\u201cThe Marmoset Brain in Stereotaxic Coordinates\u201d\u00a0<\/i><\/p>\n
Zhuhao Wu, PhD<\/strong><\/a>
zhuhao.wu@mssm.edu<\/a><\/p>\n