{"id":35,"date":"2018-03-19T17:25:11","date_gmt":"2018-03-19T17:25:11","guid":{"rendered":"http:\/\/labs.icahn.mssm.edu\/rosenberglab\/?page_id=35"},"modified":"2023-10-09T18:47:36","modified_gmt":"2023-10-09T18:47:36","slug":"publications","status":"publish","type":"page","link":"https:\/\/labs.icahn.mssm.edu\/rosenberglab\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"
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Kehrer T, Cupic A, Ye C, Yildiz S, Bouhaddou M, Crossland NA, Barrall EA, Cohen P, Tseng A, \u00c7a\u011fatay T, Rathnasinghe R, Flores D, Jangra S, Alam F, Mena I, Aslam S, Saqi A, Rutkowska M, Ummadi MR, Pisanelli G, Richardson RB, Veit EC, Fabius JM, Soucheray M, Polacco BJ, Ak B, Marin A, Evans MJ, Swaney DL, Gonzalez-Reiche AS, Sordillo EM, van Bakel H, Simon V, Zuliani-Alvarez L, Fontoura BMA, Rosenberg BR, Krogan NJ, Martinez-Sobrido L, Garc\u00eda-Sastre A, Miorin L
\nImpact of SARS-CoV-2 ORF6 and its variant polymorphisms on host responses and viral pathogenesis<\/strong><\/a>
\nCell Host & Microbe <\/strong>2023 Sep 20:S1931-3128(23)00328-1<\/p>\n

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Cohen P, DeGrace EJ, Danziger O, Patel RS, Barrall EA, Bobrowski T, Kehrer T, Cupic A, Miorin L, Garc\u00eda-Sastre A, Rosenberg BR
\nUnambiguous detection of SARS- CoV-2 subgenomic mRNAs with single-cell RNA sequencing<\/strong><\/a>
\nMicrobiology Spectrum<\/strong> 2023 Sep 7:e0077623<\/p>\n

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Prescott RA, Pankow AP, de Vries M, Crosse KM, Patel RS, Alu M, Loomis C, Torres V, Koralov S, Ivanova E, Dittmann M, Rosenberg BR
\nA comparative study of in vitro<\/em> air-liquid interface culture models of the human airway epithelium evaluating cellular heterogeneity and gene expression at single cell resolution<\/strong><\/a>
\nRespiratory Research<\/strong> 2023 Aug 28;24(1):213<\/p>\n

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Higgins CA, Nilsson-Payant BE, Bonaventure B, Kurland AP, Ye C, Yaron TM, Johnson JL, Adhikary P, Golynker I, Panis M, Danziger O, Rosenberg BR, Cantley LC, Mart\u00ednez-Sobrido L, tenOever B, Johnson JR
\nSARS-CoV-2 hijacks p38\u03b2\/MAPK11 to promote virus replication<\/strong><\/a>
\nmBio<\/strong> 2023 Aug 31;14(4):e0100723<\/p>\n

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Sun T, Rosenberg BR, Chung H, Rice CM
\nIdentification of ADAR1 p150 and p110 Associated Edit Sites<\/a><\/strong>
\nMethods in Molecular Biology<\/strong> 2023;2651:285-294.<\/p>\n

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Malle L, Patel RS, Martin-Fernandez M, Stewart OJ, Philippot Q, Buta S, Richardson A, Barcessat V, Taft J, Bastard P, Samuels J, Mircher C, Rebillat AS, Maillebouis L, Vilaire-Meunier M, Tuballes K, Rosenberg BR, Trachtman R, Casanova JL, Notarangelo LD, Gnjatic S, Bush D, Bogunovic D
\nAutoimmunity in Down’s syndrome via cytokines, CD4 T cells and CD11c+ B cells<\/strong><\/a>
\nNature<\/strong> 2023 Mar;615(7951):305-314.<\/p>\n

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Gagliardi TB, Iverson E, DeGrace EJ, Rosenberg BR, Scull MA<\/p>\n<\/div>\n

Immunofluorescence\u2010Mediated Detection of Respiratory Virus Infections in Human Airway Epithelial Cultures<\/strong><\/a><\/div>\n
Current Protocols<\/strong> 2022 Jun;2(6).<\/div>\n

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Danziger O, Patel RS, DeGrace EJ, Rosen MR, Rosenberg BR<\/p>\n<\/div>\n

Inducible CRISPR activation screen for interferon-stimulated genes identifies OAS1 as a SARS-CoV-2 restriction factor<\/a><\/strong><\/div>\n
PLoS Pathogens<\/strong> 2022 Apr 14;18(4):e1010464.<\/div>\n

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van der Heide V, Jangra S, Cohen P, Rathnasinghe R, Aslam S, Aydillo T, Geanon D, Handler D, Kelley G, Lee B, Rahman A, Dawson T, Qi J, D\u2019Souza D, Kim-Schulze S, Panzer JK, Caicedo A, Kusmartseva I, Posgai AL, Atkinson MA, Albrecht RA, Garc\u00eda-Sastre A, Rosenberg BR, Schotsaert M, Homann D<\/p>\n<\/div>\n

Limited extent and consequences of pancreatic SARS-CoV-2 infection<\/strong><\/a><\/div>\n
Cell Reports<\/strong> 2022 Mar 15;38(11):110508<\/div>\n

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Nilsson-Payant BE, Uhl S, Grimont A, Doane AS, Cohen P, Patel RS, Higgins CA, Acklin JA, Bram Y, Chandar V, Blanco-Melo D, Panis M, Lim JK, Elemento O, Schwartz RE, Rosenberg BR, Chandwani R, tenOever BR<\/p>\n<\/div>\n

The NF-\u03baB Transcriptional Footprint Is Essential for SARS-CoV-2 Replication<\/strong><\/a><\/div>\n
Journal of Virology<\/strong> 2021 Nov 9;95(23):e0125721<\/div>\n

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Sun T, Yu Y, Wu X, Acevedo A, Luo JD, Wang J, Schneider WM, Hurwitz B, Rosenberg BR, Chung H, Rice CM<\/p>\n<\/div>\n

Decoupling expression and editing preferences of ADAR1 p150 and p110 isoforms<\/strong><\/a><\/div>\n
Proceedings of the National Academy of Sciences USA<\/strong> 2021 Mar 23;118(12):e2021757118<\/div>\n

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Tomlinson JE, Wolfisberg R, Fahn\u00f8e U, Patel RS, Trivedi S, Kumar A, Sharma H, Nielsen L, McDonough SP, Bukh J, Tennant BC, Kapoor A, Rosenberg BR, Rice CM, Divers TJ, Van de Walle GR, Scheel TKH<\/div>\n
Pathogenesis MicroRNA-122 Gene-Regulation, and Protective Immune Responses After Acute Equine Hepacivirus Infection<\/strong><\/a><\/div>\n
Hepatology<\/strong> 2021 Sep;74(3):1148\u20131163<\/div>\n

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Patel RS, Tomlinson JE, Divers TJ, Van de Walle GR, Rosenberg BR<\/div>\n
Single-cell resolution landscape of equine peripheral blood mononuclear cells reveals diverse cell types including T-bet+ B cells<\/strong><\/a><\/div>\n
BMC Biology<\/strong> 2021 Jan 22;19(1):13<\/span><\/div>\n<\/div>\n<\/div>\n

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Harman RM, Patel RS, Fan JC, Park JE, Rosenberg BR, Van de Walle GR<\/div>\n
Single-cell RNA sequencing of equine mesenchymal stromal cells from primary donor-matched tissue sources reveals functional heterogeneity in immune modulation and cell motility<\/strong><\/a><\/div>\n
Stem Cell Research & Therapy<\/strong> 2020 Dec 4;11(1):524<\/div>\n<\/div>\n<\/div>\n

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Daniloski Z, Jordan TX, Wessels H-H, Hoagland DA, Kasela S, Legut M, Maniatis S, Mimitou EP, Lu L, Geller E, Danziger O, Rosenberg BR, Phatnani H, Smibert P, Lappalainen T, tenOever BR, Sanjana NE<\/div>\n
Identification of Required Host Factors for SARS-CoV-2 Infection in Human Cells<\/strong><\/a><\/div>\n
Cell<\/strong> 2021 Jan 7;184(1):92-105.e16<\/div>\n<\/div>\n<\/div>\n

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Miorin L, Kehrer T, Sanchez-Aparicio MT, Zhang K, Cohen P, Patel RS, Cupic A, Makio T, Mei M, Moreno E, Danziger O, White KM, Rathnasinghe R, Uccellini M, Gao S, Aydillo T, Mena I, Yin X, Martin-Sancho L, Krogan NJ, Chanda SK, Schotsaert M, Wozniak RW, Ren Y, Rosenberg BR, Fontoura BMA, Garc\u00eda-Sastre A<\/div>\n
SARS-CoV-2 Orf6 hijacks Nup98 to block STAT nuclear import and antagonize interferon signaling<\/strong><\/a><\/div>\n
Proceedings of the National Academy of Sciences USA<\/strong> 2020 Nov 10;117(45):28344\u201328354.<\/div>\n<\/div>\n<\/div>\n

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Gruber CN, Calis JJA, Buta S, Evrony G, Martin JC, Uhl SA, Caron R, Jarchin L, Dunkin D, Phelps R, Webb BD, Saland JM, Merad M, Orange JS, Mace EM, Rosenberg BR, Gelb BD, Bogunovic D<\/div>\n
Complex Autoinflammatory Syndrome Unveils Fundamental Principles of JAK1 Kinase Transcriptional and Biochemical Function<\/strong><\/a><\/div>\n
Immunity<\/strong> 2020 Sep 15;53(3):672-684.e11<\/span><\/div>\n<\/div>\n<\/div>\n

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Tomlinson JE, Wolfisberg R, Fahn\u00f8e U, Sharma H, Renshaw RW, Nielsen L, Nishiuchi E, Holm C, Dubovi E, Rosenberg BR, Tennant BC, Bukh J, Kapoor A, Divers TJ, Rice CM, Van de Walle GR, Scheel TKH<\/div>\n
Equine pegiviruses cause persistent infection of bone marrow and are not associated with hepatitis<\/strong><\/a><\/div>\n
PLoS Pathogens<\/strong> 2020 Jul;16(7):e1008677<\/div>\n<\/div>\n<\/div>\n

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Ho JSY, Angel M, Ma Y, Sloan E, Wang G, Martinez-Romero C, Alenquer M, Roudko V, Chung L, Zheng S, Chang M, Fstkchyan Y, Clohisey S, Dinan AM, Gibbs J, Gifford R, Shen R, Gu Q, Irigoyen N, Campisi L, Huang C, Zhao N, Jones JD, van Knippenberg I, Zhu Z, Moshkina N, Meyer L, Noel J, Peralta Z, Rezelj V, Kaake R, Rosenberg BR, Wang B, Wei J, Paessler S, Wise HM, Johnson J, Vannini A, Amorim MJ, Baillie JK, Miraldi ER, Benner C, Brierley I, Digard P, \u0141uksza M, Firth AE, Krogan N, Greenbaum BD, MacLeod MK, van Bakel H, Garc\u00eca-Sastre A, Yewdell JW, Hutchinson E, Marazzi I<\/div>\n
Hybrid Gene Origination Creates Human-Virus Chimeric Proteins during Infection<\/strong><\/a><\/div>\n
Cell<\/strong> 2020 Jun 25;181(7):1502-1517.e23<\/div>\n
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Seifert LL, Si C, Saha D, Sadic M, de Vries M, Ballentine S, Briley A, Wang G, Valero-Jimenez AM, Mohamed A, Schaefer U, Moulton HM, Garc\u00eda-Sastre A, Tripathi S, Rosenberg BR, Dittmann M<\/div>\n
The ETS transcription factor ELF1 regulates a broadly antiviral program distinct from the type I interferon response<\/a><\/strong><\/div>\n
PLoS Pathogens<\/strong> 2019 Nov 4;15(11):e1007634.<\/div>\n<\/div>\n<\/div>\n

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Clijsters L, Hoencamp C, Calis JJA, Marzio A, Handgraaf SM, Cuitino MC, Rosenberg BR, Leone G, Pagano M
\nCyclin F Controls Cell-Cycle Transcriptional Outputs by Directing the Degradation of the Three Activator E2Fs<\/strong><\/a>
\nMolecular Cell<\/strong> 2019 Jun 20;74(6):1264-1277.e7<\/p>\n

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Rosenberg BR, Depla M, Freije CA, Gaucher D, Mazouz S, Boisvert M, B\u00e9dard N, Bruneau J, Rice CM, Shoukry NH
\nLongitudinal transcriptomic characterization of the immune response to acute hepatitis C virus infection in patients with spontaneous viral clearance<\/strong><\/a>
\nPLoS Pathogens<\/strong> 2018 Sep 17;14(9):e1007290<\/p>\n

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Zhang SY, Clark NE, Freije CA, Pauwels E, Taggart AJ, Okada S, Mandel H, Garcia P, Ciancanelli MJ, Biran A, Lafaille FG, Tsumura M, Cobat A, Luo J, Volpi S, Zimmer B, Sakata S, Dinis A, Ohara O, Garcia Reino EJ, Dobbs K, Hasek M, Holloway SP, McCammon K, Hussong SA, DeRosa N, Van Skike CE, Katolik A, Lorenzo L, Hyodo M, Faria E, Halwani R, Fukuhara R, Smith GA, Galvan V, Damha MJ, Al-Muhsen S, Itan Y, Boeke JD, Notarangelo LD, Studer L, Kobayashi M, Diogo L, Fairbrother WG, Abel L, Rosenberg BR, Hart PJ, Etzioni A, Casanova JL
\n Inborn Errors of RNA Lariat Metabolism in Humans with Brainstem Viral Infection<\/strong><\/a>
\nCell<\/strong> 2018 Feb 22;172(5):952-965.e18<\/p>\n

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Chung H, Calis JJA, Wu X, Sun T, Yu Y, Sarbanes SL, Dao Thi VL, Shilvock AR, Hoffmann HH, Rosenberg BR, Rice CM
\n Human ADAR1 Prevents Endogenous RNA from Triggering Translational Shutdown<\/strong><\/a>
\nCell<\/strong> 2018 Feb 8;172(4):811-824.e14<\/p>\n

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Wu X, Dao Thi VL, Huang Y, Billerbeck E, Saha D, Hoffmann HH, Wang Y, Silva LAV, Sarbanes S, Sun T, Andrus L, Yu Y, Quirk C, Li M, MacDonald MR, Schneider WM, An X, Rosenberg BR, Rice CM
\n Intrinsic Immunity Shapes Viral Resistance of Stem Cells<\/strong><\/a>
\nCell<\/strong> 2018 Jan 25;172(3):423-438.e25<\/p>\n

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Rosenberg BR, Freije CA, Imanaka N, Chen ST, Eitson JL, Caron R, Uhl SA, Zeremski M, Talal A, Jacobson IM, Rice CM, Schoggins JW
\n Genetic Variation at IFNL4 Influences Extrahepatic Interferon-Stimulated Gene Expression in Chronic HCV Patients<\/strong><\/a>
\nJournal of Infectious Diseases<\/strong> 2018 Jan 30;217(4):650-655<\/p>\n

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Kenney AD, Dowdle JA, Bozzacco L, McMichael TM, St Gelais C, Panfil AR, Sun Y, Schlesinger LS, Anderson MZ, Green PL, L\u00f3pez CB, Rosenberg BR, Wu L, Yount JS
\n Human Genetic Determinants of Viral Diseases<\/strong><\/a>
\nAnnual Review of Genetics<\/strong> 2017 Nov 27;51:241-263<\/p>\n

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Simon EP, Freije CA, Farber BA, Lalazar G, Darcy DG, Honeyman JN, Chiaroni-Clarke R, Dill BD, Molina H, Bhanot UK, La Quaglia MP, Rosenberg BR, Simon SM
\n Transcriptomic characterization of fibrolamellar hepatocellular carcinoma<\/strong><\/a>
\nProceedings of the National Academy of Sciences USA<\/strong> 2015 Nov 3;112(44):E5916-25<\/p>\n

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Calis JJ, Rosenberg BR
\n Characterizing immune repertoires by high throughput sequencing: strategies and applications<\/strong><\/a>
\nTrends in Immunology<\/strong> 2014 Oct 8;35(12):581-590<\/p>\n

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Honeyman JN, Simon EP, Robine N, Chiaroni-Clarke R, Darcy DG, Lim II, Gleason CE, Murphy JM, Rosenberg BR, Teegan L, Takacs CN, Botero S, Belote R, Germer S, Emde AK, Vacic V, Bhanot U, LaQuaglia MP, Simon SM
\n Detection of a recurrent DNAJB1-PRKACA chimeric transcript in fibrolamellar hepatocellular carcinoma<\/strong><\/a>
\nScience<\/strong> 2014 Feb 28;343(6174):1010-4<\/p>\n

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Fritz EL, Rosenberg BR, Lay K, Mihailovi\u0107 A, Tuschl T, Papavasiliou FN
\n A comprehensive analysis of the effects of the deaminase AID on the transcriptome and methylome of activated B cells<\/strong><\/a>
\nNature Immunology<\/strong> 2013 Jul;14(7):749-55<\/p>\n

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Rosenberg BR, Dewell S, Papavasiliou FN
\n Identifying mRNA editing deaminase targets by RNA-Seq<\/strong><\/a>
\nMethods in Molecular Biology<\/strong> 2011;718:103-19<\/p>\n

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Rosenberg BR, Hamilton CE, Mwangi MM, Dewell S, Papavasiliou FN
\n Transcriptome-wide sequencing reveals numerous APOBEC1 mRNA-editing targets in transcript 3′ UTRs<\/strong><\/a>
\nNature Structural & Molecular Biology<\/strong> 2011 Feb;18(2):230-6<\/p>\n

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Mansour H, Laird ME, Saleh R, Casrouge A, Eldin NS, El Kafrawy S, Hamdy M, Decalf J, Rosenberg BR, Fontanet A, Abdel-Hamid M, Mohamed MK, Albert ML, Rafik M
\n Circulating plasmacytoid dendritic cells in acutely infected patients with hepatitis C virus genotype 4 are normal in number and phenotype<\/strong><\/a>
\nJournal of Infectious Diseases<\/strong> 2010 Dec 1;202(11):1671-5<\/p>\n

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Hamilton CE, Papavasiliou FN, Rosenberg BR
\n Diverse functions for DNA and RNA editing in the immune system<\/strong><\/a>
\nRNA Biology<\/strong> 2010 Mar-Apr;7(2):220-8<\/p>\n

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Rosenberg BR, Papavasiliou FN
\n Beyond SHM and CSR: AID and related cytidine deaminases in the host response to viral infection<\/strong><\/a>
\nAdvances in Immunology<\/strong> 2007;94:215-44<\/p>\n

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Kehrer T, Cupic A, Ye C, Yildiz S, Bouhaddou M, Crossland NA, Barrall EA, Cohen P, Tseng A, \u00c7a\u011fatay T, Rathnasinghe R, Flores D, Jangra S, Alam F, Mena I, Aslam S, Saqi A, Rutkowska M, Ummadi MR, Pisanelli G, Richardson RB, Veit EC, Fabius JM, Soucheray M, Polacco BJ, Ak B, Marin A, Evans […]<\/p>\n","protected":false},"author":242,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_et_pb_use_builder":"","_et_pb_old_content":"","_et_gb_content_width":"","footnotes":""},"class_list":["post-35","page","type-page","status-publish","hentry"],"aioseo_notices":[],"_links":{"self":[{"href":"https:\/\/labs.icahn.mssm.edu\/rosenberglab\/wp-json\/wp\/v2\/pages\/35","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/labs.icahn.mssm.edu\/rosenberglab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/labs.icahn.mssm.edu\/rosenberglab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/rosenberglab\/wp-json\/wp\/v2\/users\/242"}],"replies":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/rosenberglab\/wp-json\/wp\/v2\/comments?post=35"}],"version-history":[{"count":17,"href":"https:\/\/labs.icahn.mssm.edu\/rosenberglab\/wp-json\/wp\/v2\/pages\/35\/revisions"}],"predecessor-version":[{"id":18984,"href":"https:\/\/labs.icahn.mssm.edu\/rosenberglab\/wp-json\/wp\/v2\/pages\/35\/revisions\/18984"}],"wp:attachment":[{"href":"https:\/\/labs.icahn.mssm.edu\/rosenberglab\/wp-json\/wp\/v2\/media?parent=35"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}