{"id":95,"date":"2017-06-03T23:52:00","date_gmt":"2017-06-03T23:52:00","guid":{"rendered":"http:\/\/labs.icahn.mssm.edu\/pei-wang-lab\/?page_id=95"},"modified":"2023-08-05T03:46:56","modified_gmt":"2023-08-05T03:46:56","slug":"publications","status":"publish","type":"page","link":"https:\/\/labs.icahn.mssm.edu\/pei-wang-lab\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"
\n

Recent Publications<\/strong><\/h2>\n

2023<\/em><\/strong><\/span><\/p>\n

Lundeen RA, Kennedy JJ, Murillo OD\u2026\u2026,Wang P<\/strong>, Whiteaker JR, Paulovich AG. \u201cMonitoring both extended and tryptic forms of stable isotope-labeled standard peptides provides an internal quality control of proteolytic digestion in targeted mass spectrometry-based assays.\u201d Mol Cell Proteomics<\/u><\/em>. 2023 Jul 19:100621. Epub ahead of print. PMID: 37478973.<\/p>\n

Y. Li, Y. Dou, F. D. Leprevost, Y. Geffen, A. Calinawan, F. Aguet, Y. Akiyama, S. Anand, C. Birger, S. Cao\u2026\u2026, P. Wang<\/strong>, A. I. Robles, B. Zhang, S. H. Payne, Clinical Proteomic Tumor Analysis Consortium \u201c<\/strong>Proteogenomic Data and Resources for Pan-Cancer Analysis\u201d, Cancer Cell<\/u><\/em>. 2023 Imprint<\/p>\n

S. Chowdhury, J. J. Kennedy, R. G. Ivey, O. D. Murillo, N. Hosseini, X. Song, F. Petralia, A. Calinawan, S. R. Savage\u2026\u2026S. C. Mok, S. H. Kaufmann, C. Drescher, M. Cieslik, P. Wang&<\/sup><\/em><\/strong>, M. J. Birrer&<\/sup><\/em><\/strong>, Amanda G. Paulovich&<\/sup><\/em><\/strong>, and Clinical Proteomic Tumor Analysis Consortium (CPTAC) Coaborators, \u201cProteogenomic analysis of chemo-refractory high grade serous ovarian cancer\u201d, Cell<\/u><\/em>. 2023 Imprint<\/p>\n

Y. Dou, Lizabeth Katsnelson, Marina A. Gritsenko*<\/sup>, Yingwei Hu, Boris Reva, Runyu Hong, Yi-Ting Wang, Iga Kolodziejczak, Rita Jui-Hsien Lu, Chia-Feng Tsai,, \u2026\u2026, Wang P<\/strong>,\u2026\u2026, Matthew L. Anderson, Karin D. Rodland, Bing Zhang, Tao Liu, David Feny\u00f6, Clinical Proteomic Tumor Analysis Consortium. Proteogenomic insights suggest druggable pathways in endometrial carcinoma. Cancer Cell<\/u><\/em>. 2023 June Imprint.<\/p>\n

X. Song, J. Ji, J. H. Rothstein, S. E. Alexeeff, L. C. Sakoda, A. Sistig, N. Achacoso, E. Jorgenson, A. S. Whittemore, R. J. Klein, L. A. Habel, P. Wang<\/strong>&<\/sup><\/em><\/strong>, and W. Sieh&<\/sup><\/em><\/strong>, \u201cMiXcan: a Framework for Cell-Type-Aware Transcriptome-Wide Association Studies with an Application to Breast Cancer\u201d, Nature Communication<\/u><\/em>. 14, 377 (2023). 2023 Jan 23;14(1):377. doi: 10.1038\/s41467-023-35888-4. PMID: 36690614; PMCID: PMC9871010.<\/p>\n

L Lih TM, Dhanasekaran SM, Mannan R, Chen L, Cieslik M, Wu Y, Lu RJ, Clark DJ, Ko\u0142odziejczak I, Hong R, Chen S, \u2026\u2026, Wang P<\/strong>,\u2026\u2026,Zhang H, Ding L; Clinical Proteomic Tumor Analysis Consortium. Histopathologic and proteogenomic heterogeneity reveals features of clear cell renal cell carcinoma aggressiveness. Cancer Cell<\/u><\/em>. 2023 Jan 9;41(1):139-163.e17. PMID: 36563681; PMCID: PMC9839644.<\/p>\n

J. R. Whiteaker, L. Zhao, R. M. Schoenherr, D. Huang, R. A. Lundeen, U. Voytovich, J. J. Kennedy, R. G. Ivey, \u2026, P. Wang<\/strong> and A. G. Paulovich; \u201cA multiplexed assay for quantifying immunomodulatory proteins supports correlative studies in immunotherapy clinical trials.\u201d Frontiers in Oncology<\/u><\/em>. 2023 May 2;13:1168710. doi: 10.3389\/fonc.2023.1168710. PMID: 37205196; PMCID: PMC10185886.<\/p>\n

2022<\/em><\/strong><\/span><\/p>\n

Chen H, Fan S, Stone J, Thompson DJ, Douglas J, Li S, Scott C, Bolla MK, Wang Q, Dennis J, Michailidou K, Li C, \u2026, Wang P<\/strong>, \u2026, Tamimi RM, Vachon CM, Lindstr\u00f6m S. \u201cGenome-wide and transcriptome-wide association studies of mammographic density phenotypes reveal novel loci.\u201d Breast Cancer Res<\/u><\/em>. 2022 Apr 12;24(1):27. doi: 10.1186\/s13058-022-01524-0. PMID: 35414113; PMCID: PMC9006574.<\/p>\n

Kennedy JJ, Whiteaker JR, Ivey RG, Burian A, Chowdhury S, Tsai CF, Liu T, Lin C, Murillo OD, Lundeen RA, Jones LA, Gafken PR, Longton G, Rodland KD, Skates SJ, Landua J, Wang P<\/strong>, Lewis MT, Paulovich AG. \u201cInternal Standard Triggered-Parallel Reaction Monitoring Mass Spectrometry Enables Multiplexed Quantification of Candidate Biomarkers in Plasma.\u201d Anal Chem<\/u><\/em>. (2022) Jul 12;94(27):9540-9547. PMID: 35767427.<\/p>\n

S. Chowdhury, R. Wang, Q. Yu, C. J. Huntoon, L. M. Karnitz, S. H. Kaufmann, S. P. Gygi, Michael J. Birrer, Amanda G. Paulovich, J Peng&<\/sup><\/em>, P. Wang&<\/sup><\/em><\/strong>, \u201cDAGBagM: Learning directed acyclic graphs of mixed variables with an application to identify prognostic protein biomarkers in ovarian cancer\u201d, BMC Bioinformatics, (2022) Aug 5;23(1):321. doi: 10.1186\/s12859-022-04864-y. PMID: 35931981; PMCID: PMC9354326.<\/p>\n

Lee, N. Tignor, W. Cowell, E. Colicino, A. Bozack, A. Baccarelli, P. Wang<\/strong>\u2666<\/sup><\/em><\/strong>, R. Wright, \u201cAssociations between antenatal maternal asthma status and placental DNA methylation\u201d, Placenta<\/u><\/em> (2022) Aug;126:184-195. doi: 10.1016\/j.placenta.2022.06.008. Epub 2022 Jul 3. PMID: 35858526; PMCID: PMC9679966.<\/p>\n

Song X, Ji J, Wang P<\/strong>&<\/sup><\/em><\/strong>, \u201ciProMix: A mixture model for studying the function of ACE2 based on bulk proteogenomic data\u201d, Journal of the American Statistical Association<\/u><\/em> (2022), PMCID:\u00a0PMC9871010<\/a><\/p>\n

Li, S., Wang, Z., Vieira, L.A\u2026, Wang P<\/strong>, \u2026, E. E. Schadt, L Li, \u201cImproving preeclampsia risk prediction by modeling pregnancy trajectories from routinely collected electronic medical record data.\u201d\u00a0NPJ Digit. Med<\/u><\/em>.\u00a05,\u00a068 (2022). https:\/\/doi.org\/10.1038\/s41746-022-00612-x<\/p>\n

2021<\/em><\/strong><\/span><\/p>\n

Leader AM, Grout JA, Maier BB, Nabet BY, Park MD, Tabachnikova A, Chang C, \u2026, Flores R, Wang P<\/strong>, M\u00fcller S, Mellman I, Beasley MB, Salmon H, Rahman AH, Marron TU, Kenigsberg E, Merad M. \u201cSingle-cell analysis of human non-small cell lung cancer lesions refines tumor classification and patient stratification.\u201d Cancer Cell<\/u><\/em>. 2021 Dec 13;39(12):1594-1609.e12. doi: 10.1016\/j.ccell.2021.10.009. PMID: 34767762; PMCID: PMC8728963.<\/p>\n

Livanos AE, Jha D, Cossarini F, Gonzalez-Reiche AS, Tokuyama M, Aydillo T, Parigi TL, Ladinsky MS, Ramos I, Dunleavy K, Lee B, \u2026Wang P<\/strong>, \u2026 Petralia F, van Bakel H, Garcia-Sastre A, Mehandru S. \u201cIntestinal Host Response to SARS-CoV-2 Infection and COVID-19 Outcomes in Patients With Gastrointestinal Symptoms.\u201d Gastroenterology<\/u><\/em>. 2021 Jun;160(7):2435-2450.e34. doi: 10.1053\/j.gastro.2021.02.056. Epub 2021 Mar 4. PMID: 33676971; PMCID: PMC7931673.<\/p>\n

Lewis S, Cedillo MA, Lee KM, Bane O, Hectors S, Ma W, Wang P<\/strong>, Stocker D, Morris DV, Pinato D, Sung M, Marron T, Schwartz M, Taouli B. \u201cComparative assessment of standard and immune response criteria for evaluation of response to PD-1 monotherapy in unresectable HCC\u201d, Abdom Radiol (NY)<\/u><\/em>. 2021 Dec 29. doi: 10.1007\/s00261-021-03386-0. Epub ahead of print. PMID: 34964909.<\/p>\n

D. Huang, S. Chowdhury, H. Wang, S. R. Savage, R. G. Ivey, J. J. Kennedy, Jeffrey R. Whiteaker, Chenwei Lin, Xiaonan Hou, Ann L. Oberg, Melissa C. Larson, Najmeh Eskandari, Davide A. Delisi, Saverio Gentile, Catherine J. Huntoon, Uliana J. Voytovich, Zahra J. Shire, Qing Yu, Steven P. Gygi, Andrew N. Hoofnagle, Zachary T. Herbert, Travis D. Lorentzen, Anna Calinawan, Larry M Karnitz, S. John Weroha, Scott H. Kaufmann, Bing Zhang,Pei Wang<\/strong>&, Michael J. Birrer&, Amanda G. Paulovich&, \u201cMultiomic analysis identifies CPT1A as a potential therapeutic target in platinum-refractory high grade serous ovarian cancer\u201d, Cell Medicine Report<\/span> 2021 Dec 21;2(12):100471. doi: 10.1016\/j.xcrm.2021.100471. <\/em><\/p>\n

D. Huang, S. R. Savage, A. P. Calinawan, C. Lin, B. Zhang, P. Wang<\/strong>, T K. Starr, M. J. Birrer, A. G. Paulovich, \u201cA highly annotated database of genes associated with platinum resistance in cancer\u201d, Oncogene<\/span> 2021 Nov;40(46):6395-6405. doi: 10.1038\/s41388-021-02055-2. Epub 2021 Oct 13. PMID: 34645978; PMCID: PMC8602037.<\/em><\/p>\n

Kennedy JJ, Whiteaker JR, Kennedy LC, Bosch DE, Lerch ML, Schoenherr RM, Zhao L, Lin C, Chowdhury S, Kilgore MR, Allison KH, Wang P<\/strong>, Hoofnagle AN, Baird GS, Paulovich AG., \u201cQuantification of Human Epidermal Growth Factor Receptor 2 by Immunopeptide Enrichment and Targeted Mass Spectrometry in Formalin-Fixed Paraffin-Embedded and Frozen Breast Cancer Tissues\u201d.Clin Chem. <\/span> 2021 Jun 17 doi: 10.1093\/clinchem\/hvab047. PMID: 34136904.<\/em><\/p>\n

S. Tuminello, F. Petralia, R. Veluswamy, P. Wang<\/strong>, R. Flores, E. Taioli, \u201cPrognostic Value of the Tumor Immune Microenvironment for Early-Stage, Non-small Cell Lung Cancer\u201d, Am J Clin Oncol.<\/span> 2021 May 19. doi: 10.1097\/COC.0000000000000832.<\/em><\/p>\n

S. Yoo, Z. Shi, B. Wen, S. Kho, R. Pan, H. Feng, H. Chen, A. Carlsson, P. Ed\u00e9n, W. Ma, M. Raymer, E. J. Maier, Z. Tezak, E. Johanson, D. Hinton, H. Rodriguez, J. Zhu, E. Boja, P. Wang<\/strong>, B Zhang, \u201cA Community Effort to Identify and Correct Mislabeled Samples in Proteogenomic Studies\u201d, Patterns<\/span> 2021, Volume 2, Issue 5.<\/em><\/p>\n

S. Satpath, P. M. Jean Beltran, S. R. Savage, K. Krug, F. Petralia, C. Kumar-Sinha, Y. Dou, B. Reva, S. V. Vascaikar, M. H. Kane, \u2026\u2026 Pei Wang<\/strong>, Steve A. Carr, B. Zhang, D.R. Mani, M. A. Gillette, CPTAC, \u201cSystems-wide analysis of proteogenomic variation in lung squamous cell carcinoma\u201d, Cell<\/span> 2021, DOI:https:\/\/doi.org\/10.1016\/j.cell.2021.07.016 <\/em><\/p>\n

Xiaoyu Song, Jiayi Ji, Boris Reva, Himanshu Joshi, Anna Pamela Calinawan, Madhu Mazumdar, Juan P. Wisnivesky, Emanuela Taioli, Pei Wang<\/strong>, Rajwanth R. Veluswamy, \u201cPost-Anticoagulant D-dimer is a Highly Prognostic Biomarker of COVID-19 Mortality\u201d, ERJ Open Research <\/span> 2021, DOI: 10.1183\/23120541.00018-2021<\/em><\/p>\n

L. Wang, Alla Karpova, Marina A. Gritsenko, Jennifer E. Kyle, Song Cao, Yize Li, Dmitry Rykunov, Antonio Colaprico, Joseph H. Rothstein, Runyu Hong, Vasileios Stathias, MacIntosh Cornwell, Francesca Petralia,\u2026 Pei Wang<\/strong>\u2026, T. Liu, L. Ding, CPTAC \u201cProteogenomic and metabolomics characterization of human glioblastoma\u201d, Cancer Cell<\/span> 2021, Apr 12;39(4):509-528.e20<\/em><\/p>\n

D. Yan, Y. Xu and Pei Wang<\/strong>,\u201cEstimating the Number of Infected Cases in COVID-19 2 Pandemic\u201d, Journal of Data Science <\/span> 2021 Imprint; https:\/\/arxiv.org\/abs\/2005.12993<\/em><\/p>\n

Chen Huang, Lijun Chen, Sara R. Savage, Rodrigo Vargas Eguez, Yongchao Dou, Yize Li, Felipe da Veiga Leprevost, Eric J. Jaehnig, Jonathan T. Lei, Bo Wen, Michael Schnaubelt, Karsten Krug, Xiaoyu Song, \u2026 , Pei Wang<\/strong>,\u2026, H. Zhang, B. Zhang, CPTAC, \u201cProteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma\u201d, Cancer Cell<\/span> 2021, Mar 8;39(3):361-379.e16.<\/em><\/p>\n

2020<\/em><\/strong><\/span><\/p>\n

Petralia, N. Tignor, B. Reva, M. Koptyra, S. Chowdhury, D. Rykunov, A. Krek, W. Ma, J. Ji, X. Song, P. Raman, Y. Zhu, J. R. Whiteaker, A. Colaprico, A. Calinawan, S. Kalayci, Z. H. G\u00fcm\u00fc\u015f \u2026 A. C Resnick&<\/sup><\/em><\/strong>, Phillip B. Storm&<\/sup><\/em><\/strong>, Brian R. Rood&<\/sup><\/em><\/strong>, Pei Wang&<\/sup><\/em>,<\/strong> Children\u2019s Brain Tumor Tissue Consortium and Clinical Proteomic Tumor Analysis Consortium, \u201cIntegrated Proteogenomic Characterization across Major Histological types of Pediatric Brain Cancer\u201d, Cell<\/span> 2020 Dec 20;S0092-8674(20)31451-3. doi: 10.1016\/j.cell.2020.10.044.<\/em><\/p>\n

Li, A. Aue, D. Paul, J. Peng, P. Wang<\/strong>, \u201cAn adaptable generatlization of Hotelling\u2019s T^2 test in high dimension\u201d, Annual of Statistics<\/em><\/span> Volume 48, Number 3 (2020), 1815-1847.<\/p>\n

D. Beckmann*, W-J Lin*, M. Wang*, A. T. Cohain, P. Wang<\/strong>, W. Ma, Y.-C. Wang, C. Jiang, S. Hariharan, G. M. Belbin, A. Levey, N. Seyfried, E. Dammer, D. Duong, J. Lah, M. Audrain, J.-Vianney Haure-Mirande, B. Shackleton, A. W. Charney, E. Kenny, J. Zhu, V. Haroutunian, S. Gandy, Z. Tu, M. Ehrlich, B. Zhang, S. R. Salton, E. E. Schadt, \u201cMultiscale causal network models identify VGF as an Alzheimers disease gene\u201d. Nature Communication<\/span>.\u00a02020 Aug 7;11(1):3942. doi: 10.1038\/s41467-020-17405-z.<\/em><\/p>\n

M. Yang, F. Petralia, Z. Li, X. Song, S. Kim., H. Li, H. Yu, B. Lee, S. Park, E. Heo, J. Kaczmarczyk, P. St\u0119pniak, M. Warcho\u0142, T. Yu, NCI-CPTAC-DREAM Consortium, P Boutros, Y. Guan, J. Kang, H. Rodriguez, G. Stolovitzky, P. Wang<\/strong>, D. Fenyo, J. Saez-Rodriguez, \u201cCommunity Assessment of the predictability of cancer protein and phosphoprotein levels from Genomics and Transcriptomics\u201d, Cell Systems<\/span> 2020 Aug 26; 11, 186\u2013195. \u00a0<\/em><\/p>\n<\/div>\n

A. P. Calinawan, X. Song, J. Ji, S M. Dhanasekaran, F. Petralia, P. Wang&<\/sup><\/em><\/strong>, Boris Reva&<\/sup><\/em><\/strong>, \u201cProTrack: An Interactive Multi-Omics Data Browser for Proteogenomic Studies\u201d, Proteomics<\/span> 2020 Jun 8;e1900359. doi: 10.1002\/pmic.201900359.<\/em><\/p>\n

S. Kalayci, F. Petralia, P. Wang<\/strong> and Z. H. G\u00fcm\u00fc\u015f,*ProNetView-ccRCC: A web-based portal to interactively explore clear cell renal cell carcinoma proteogenomics networks\u201d, Proteomics<\/span> 2020 May 2;e2000043. doi: 10.1002\/pmic.202000043.<\/em><\/p>\n

M.A. Gillette, S. Satpathy, S. Cao, S. M. Dhanasekaran, S. Vasaikar, K. Krug, F. Petralia, \u2026, P. Wang<\/strong>, A. Nesvizhskii, L. Ding, D.R. Mani, S. A. Carr, and Cancer Proteogenomic Tumor Analysis Consortium, \u201cProteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma\u201d, Cell<\/span> 2020 Jul 9;182(1):200-225.e35. doi: 10.1016\/j.cell.2020.06.013.<\/em><\/p>\n

J. Torres, F. Petralia, T. Sato, P. Wang<\/strong>, S. Telesco, R. S. Choung, R. Strauss, X. Li, R. M. Laird, R. Gutierrez, C. K. Porter, S. Plevy, F. Princen, J. A. Murray, M. S. Riddle, J.-F. Colombel, \u201cSerum Biomarkers Identify Patients Who Will Develop Inflammatory Bowel Diseases Up to 5 y Before Diagnosis\u201d, Gastroenterology<\/span> 2020 Mar 9; S0016-5085 (20) 30327-9. doi: 10.1053\/j.gastro.2020.03.007.<\/em><\/p>\n

Y. Dou, E. A. Kawaler, D. Cui Zhou, M. A. Gritsenko, C. Huang, L. Blumenberg, A. Karpova, V. A. Petyuk, S. R. Savage, S. Satpathy, W. Liu, Y. Wu, \u2026, Pei Wang<\/strong>, \u2026, K. D. Rodland, L. Ding, B. Zhang, T. Liu, D. Feny\u00f6, and Cancer Proteogenomic Tumor Analysis Consortium. \u201cProteogenomic Characterization of Endometrial Carcinoma\u201d, Cell<\/span> 2020 Feb 20;180(4):729-748, PMID: 32059776<\/em><\/p>\n

\n

2019<\/em><\/strong><\/span><\/p>\n

S. J. Hectors, M. Cherny, K. K. Yadav, A. T. Beksa\u00e7, H. Thulasidass, S. Lewis, E. Davicioni, P. Wang<\/strong>, A. K. Tewari, B. Taouli, \u201cRadiomics Features Measured with Multiparametric Magnetic Resonance Imaging Predict Prostate Cancer Aggressiveness\u201d J Urol<\/em>.<\/span> 2019 Sep;202(3):498-505.<\/p>\n

Chen C, Lohavanichbutr P, Zhang Y, Houck JR, Upton MP, Abedi-Ardekani B, Agudo A, Ahrens W, Alemany L, Anantharaman D, Conway DI, Futran ND, Holcatova I, G\u00fcnther K, Hansen BT, Healy CM, Itani D, Kjaerheim K, Monroe MM, Thomson PJ, Witt BL, Nakoneshny S, Peterson LA, Schwartz SM, Zarins KR, Hashibe M, Brennan P, Rozek LS, Wolf G, Dort JC, Wang P<\/strong>.\u00a0 \u201cPrediction of survival of HPV16-negative, p16-negative oral cavity cancer patients using a 13-gene signature: A multicenter study using FFPE samples.\u201d Oral Oncology<\/span>, 2019,10; 100:104487<\/em><\/p>\n

D. J. Clark, S. M. Dhanasekaran, F. Petralia, J. Pan, X. Song, Y. Hu, F. Veiga Leprevost, B. Reva, T.-S. M. Lih,\u2026, M. Cieslik&<\/sup>, D. W. Chan&<\/sup>, A. I. Nesvizhskii&<\/sup>, P. Wang&<\/sup><\/strong>, H. Zhang&<\/sup>, and the NCI CPTAC Investigators. \u201cIntegrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma\u201d, Cell<\/span> 2019 Oct 31;179(4):964-983.e31.<\/em><\/p>\n

Q. Gao, H. Zhu, L. Dong, W. Shi, R Chen, Z. Song, C. Huang, J. Li, X. Dong, Y. Zhou, Q. Liu, L. Ma, X. Wang, J. Zhou, Y. Liu, E. Boja, A. I. Robles, W. Ma, P. Wang<\/strong>, Y. Li, L. Ding, B. Wen, B. Zhang, H. Rodriguez, D. Gao, H. Zhou, J. Fan, \u201cIntegrated Proteogenomic Characterization of HBV-related Hepatocellular Carcinoma\u201d, Cell<\/span> 2019 Oct 3; 179 (2): 561-577<\/em><\/p>\n

X. Song, J. Ji, K. J. Gleason, J. A. Martignetti, L. Chen, P. Wang<\/strong>&<\/sup>, \u201cInsights into impact of DNA copy number alterations and methylations on proteogenomics landscape in human ovarian cancer via a multi-omics integrative analysis\u201d Molecular & Cellular Proteomics<\/span>, 2019, 18 (8 suppl 1) S52-S65<\/em><\/p>\n

W. Ma, L.S. Chen, S. W. Han, C. Lin, A. Paulovich, H. Zhong, P. Wang<\/strong>&<\/sup>, \u201cIntegrative Proteo-genomic Analysis to Construct CNA-protein Regulatory Map in Breast and Ovarian Tumors\u201d, Molecular & Cellular Proteomics<\/span> 2019, 18 (8 suppl 1) S66-S81<\/em>Han SW, Park S, Zhong H, Ryu E, Wang P<\/strong>, Jung S, Lim J, Yoon J and Kim S (2019). \u201cEstimation of joint directed acyclic graphs with lasso family for gene networks.\u201d Communications in Statistics – Simulation and Computation<\/span><\/em> 2019, 1(15). https:\/\/doi.org\/10.1080\/03610918.2019.1618869<\/p>\n

S. Tuminello, R. Veluswamy, W. Lieberman-Cribbin, S. Gnjatic, F. Petralia, P. Wang<\/strong>, R. Flores, E. Taioli, \u201cPrognostic value of immune cells in the tumor microenvironment of early-stage lung cancer: a meta-analysis\u201d, Oncotarget<\/span> 2019; 10:7142-7155.<\/em><\/p>\n

2018<\/em><\/strong><\/span><\/p>\n

Lohavanichbutr, Y. Zhang, P. Wang<\/strong>, H. Gu, G. Nagana Gowda, D. Djukovic, M. F. Buas, D. Raftery, C. Chen, \u201cSalivary metabolomics profiling distinguishes patients with oral cavity squamous cell carcinoma from normal controls\u201d, PLoS One<\/em><\/span>,<\/u> 2018,13(9)<\/p>\n

M. Wang, N. D. Beckmann, P. R., E. Wang, X. Zhou, Q. Wang, C. Ming, R. Neff, W. Ma, J. F. Fullard, M. E. Hauberg, J. Bendl, M. A. Peters, B. Logsdon, P. Wang<\/b>, and et.al., Eric Schadt & Bin Zhang \u201cThe Mount Sinai cohort of large-scale genomic, transcriptomic and proteomic data in Alzheimer’s disease\u201d <\/span>Scientific Data<\/i><\/span> <\/span>5, Article number: 180185 (2018)<\/span><\/p>\n

E. Boja, Z. Tezak, B. Zhang, P. Wang<\/b>, E. Johanson, D. Hinton, H. Rodriguez,\u201cRight data for right patient \u2013 a precision FDA NCI-CPTAC Multi-omics Mislabeling Challenge\u201d, <\/span>Nature Medicine<\/i><\/span><\/span> 2018, <\/i>24, pages1301\u20131302.<\/span><\/p>\n

K. J. Brunst, N. Tignor, A. Just, Z. Liu, X. Lin, M. Hacker, M. B. Enlow, R. Wright,\u00a0\u00a0P. Wang<\/b>, Baccarelli, R. J. Wright, \u201cCumulative lifetime maternal stress and genome-wide placental DNA methylation: the PRISM cohort\u201d, <\/span>Epigenetics<\/span>\u00a0<\/i><\/span>2018 Aug 15:1-17. doi: 10.1080\/15592294<\/i><\/span><\/p>\n

C.J. Conley, U. Ozbek, P. Wang<\/b> and J. Peng, Characterizing major functional consequences of DNA copy number alterations in breast and ovarian tumors through spaceMap, <\/span>J. of Genetics and Genomics<\/i><\/span><\/span>\u00a0<\/i><\/span>2018 Jul 20;45(7):361-371.<\/i><\/span><\/p>\n

J. Wang, P. Wang<\/b>, D. Hedeker, L. S. Chen, \u201cA multivariate mixed-effects selection model framework for batch-processed proteomics data with non-ignorable missingness\u201d, <\/span>Biostatistics<\/i><\/span><\/span>\u00a02019 Oct; 20(4): 648\u2013665<\/i><\/span><\/p>\n

L. Mak, M. Li, C. Cao, P. Gordon, C. Bousman, P. Wang<\/b> and Quan Long, \u201cSimPERD: Simulation-based Power Estimation for design of Rare Disease sequencing studies\u201d, <\/span>Genetic Epidemiology<\/span>,\u00a02018 Jul;42(5):480-487.<\/em><\/i><\/span><\/p>\n

F. Petralia, L. Wang, J. Peng, A. Yan, J. Zhu and P. Wang<\/b><\/span>&<\/sup><\/i><\/b><\/span>, <\/b>\u201cA new method for constructing tumor specific gene co-expression networks based on samples with tumor purity heterogeneity\u201d, <\/span>Bioinformatics<\/i><\/span><\/span> 2018 Jul 1;34(13):i528-i536.<\/i><\/span><\/p>\n

Whiteaker, JR, Zhao, L, Saul, R, Kaczmarczyk, JA, Schoenherr, RM, Moore, HD, Jones-Weinert, C, Ivey, RG, Lin, C, Hiltke, T, Reding, KW, Whiteley, G, Wang, P<\/b>, Paulovich, AG. \u201cA multiplexed mass spectrometry-based assay for robust quantification of phospho-signaling in response to DNA damage\u201d, <\/span>Radiation Research<\/span>\u00a0<\/i><\/span>2018 May;189(5):505-518.<\/i><\/span><\/p>\n

Y. Yvonne Chan, B. M. Bot, M. Zweig, N. Tignor, W. Ma, C. Suver, R. Cedeno, E. Schadt, P. Wang<\/b><\/span>&<\/sup><\/i><\/b><\/span>, \u201cThe Asthma Mobile Health Study, Smartphone Data Collected Using Research Kit\u201d, <\/span>Scientific Data<\/i><\/span><\/span> 5, Article number: 180096 (2018)<\/i><\/span><\/p>\n<\/div>\n

2017<\/span><\/strong><\/em><\/p>\n

\n

Petralia, V. N. Aushev, K. Gopalakrishnan, M. Kappil, N. W. Khin, J. Chen, S. L. Teitelbaum, P. Wang&<\/sup><\/em>, <\/strong>iJRF to Study the Effect of Environmental Exposures on miRNA-mRNA interactions in Mammary Transcript, Bioinformatics,<\/u> 2017, DOI10.1093\/bioinformatics\/btx256<\/em>F. Felix, B.R. Joubert, A. A. Baccarelli, G.C. Sharp, I.Annesi-Maesano\u2026 (P. Wang<\/strong>)\u2026S.J.London, \u201cCohort Profile: Pregnancy and childhood epigenetics (PACE) Consortium\u201d, International Journal of Epidemiology<\/u><\/em>, 2017, Imprint<\/p>\n

Chen, J. Wang, X. Wang, P. Wang&<\/sup><\/em><\/strong>, \u201cA mixed-effects model for incomplete data with Experiment-level Abundance-Dependent Missing-data Mechanism\u201d, Annals Of Applied Statistics<\/u><\/em> 2017, Vol. 11, No. 1, 114-138.<\/p>\n

Yu-Feng Yvonne Chan, Pei Wang<\/strong>, Linda Rogers, Nicole Tignor, Nicholas Genes, Steven G. Hershman, Eric R. Scott, Micol Zweig, Marcus Badgeley, Samantha Violante, Eric Krock, Ron Edgar, Rosalind Wright, Charles Powell, Joel Dudley, Eric E. Schadt, \u201cThe Asthma Mobile Health Study, a Large Scale Clinical Study Using ResearchKit\u201d, Nature Biotechnology<\/u><\/em>, 2017 doi:10.1038\/nbt.382<\/p>\n

Zhou, P. Wang<\/strong>, X. Wang, J. Zhu, and P. Song \u201cSparse multivariate factor analysis regression models and its applications to integrative genomics analysis\u201d, Genetic Epidemiology.<\/u><\/em>2017, Jan;41(1):70-80<\/p>\n<\/div>\n","protected":false},"excerpt":{"rendered":"

Recent Publications 2023 Lundeen RA, Kennedy JJ, Murillo OD\u2026\u2026,Wang P, Whiteaker JR, Paulovich AG. \u201cMonitoring both extended and tryptic forms of stable isotope-labeled standard peptides provides an internal quality control of proteolytic digestion in targeted mass spectrometry-based assays.\u201d Mol Cell Proteomics. 2023 Jul 19:100621. Epub ahead of print. PMID: 37478973. Y. Li, Y. Dou, F. […]<\/p>\n","protected":false},"author":233,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-95","page","type-page","status-publish","hentry"],"aioseo_notices":[],"_links":{"self":[{"href":"https:\/\/labs.icahn.mssm.edu\/pei-wang-lab\/wp-json\/wp\/v2\/pages\/95","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/labs.icahn.mssm.edu\/pei-wang-lab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/labs.icahn.mssm.edu\/pei-wang-lab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/pei-wang-lab\/wp-json\/wp\/v2\/users\/233"}],"replies":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/pei-wang-lab\/wp-json\/wp\/v2\/comments?post=95"}],"version-history":[{"count":16,"href":"https:\/\/labs.icahn.mssm.edu\/pei-wang-lab\/wp-json\/wp\/v2\/pages\/95\/revisions"}],"predecessor-version":[{"id":494,"href":"https:\/\/labs.icahn.mssm.edu\/pei-wang-lab\/wp-json\/wp\/v2\/pages\/95\/revisions\/494"}],"wp:attachment":[{"href":"https:\/\/labs.icahn.mssm.edu\/pei-wang-lab\/wp-json\/wp\/v2\/media?parent=95"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}