{"id":23,"date":"2015-07-01T16:05:21","date_gmt":"2015-07-01T16:05:21","guid":{"rendered":"http:\/\/labs.icahn.mssm.edu\/murphylab\/?page_id=23"},"modified":"2020-05-26T14:38:45","modified_gmt":"2020-05-26T14:38:45","slug":"publications","status":"publish","type":"page","link":"https:\/\/labs.icahn.mssm.edu\/murphylab\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"

Most Recent:<\/p>\n

2020<\/strong><\/p>\n

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Akhil Vaid1, Sulaiman Somani, Adam J Russak, \u00a0Jessica K De Freitas1,3, Fayzan F\u00a0Chaudhry, Ishan Paranjpe, Kipp W Johnson3, Samuel J Lee, Riccardo Miotto,\u00a0Shan Zhao, Noam D Beckmann, Nidhi Naik, Kodi Arfer, Arash Kia, Prem\u00a0Timsina, Anuradha Lala, Manish Paranjpe, Patricia Glowe, Eddye Golden,\u00a0Matteo Danieletto, Manbir Singh, Dara Meyer, Paul F O\u2019Reilly, Laura H\u00a0Huckins, Patricia Kovatch, Joseph Finkelstein, Robert M Freeman, Edgar\u00a0Argulian, Andrew Kasarskis, Bethany Percha, Judith A Aberg, Emilia\u00a0Bagiella, Carol R Horowitz, Barbara Murphy, Eric J Nestler, Eric E Schad,\u00a0Judy H Cho, Carlos Cordon-Card, Valentin Fuster, Dennis S Charney, David\u00a0L Reich, Erwin P Bottinger, Matthew A Levin, Jagat Narula, Zahi A Fayad,\u00a0Allan C Just, Alexander W Charney, Girish N Nadkarni, Benjamin S\u00a0Glicksberg on behalf of the Mount Sinai Covid Informatics Center (MSCIC). \u00a0Machine Learning to Predict Mortality and Critical Events in COVID-19 Positive New York City Patients,\u00a0<\/a>https:\/\/doi.org\/10.1101\/2020.04.26.20073411.this version posted April 28, 2020.<\/p>\n<\/div>\n<\/div>\n<\/div>\n

Lili<\/span> Chan<\/span><\/span>, Kumardeep<\/span> Chaudhary<\/span><\/span>, Aparna<\/span> Saha<\/span><\/span>, Kinsuk<\/span> Chauhan<\/span><\/span>, Akhil<\/span> Vaid<\/span><\/span>, Mukta<\/span> Baweja<\/span><\/span>, Kirk<\/span> Campbell<\/span><\/span>, Nicholas<\/span> Chun<\/span><\/span>, Miriam<\/span> Chung<\/span><\/span>, Priya<\/span> Deshpande<\/span><\/span>, Samira S<\/span> Farouk<\/span><\/span>, Lewis<\/span> Kaufman<\/span><\/span>, Tonia<\/span> Kim<\/span><\/span>, Holly<\/span> Koncicki<\/span><\/span>, Vijay<\/span> Lapsia<\/span><\/span>, Staci<\/span> Leisman<\/span><\/span>, Emily<\/span> Lu<\/span><\/span>, Kristin<\/span> Meliambro<\/span><\/span>, Madhav C<\/span> Menon<\/span><\/span>, Joshua L<\/span> Rein<\/span><\/span>, Shuchita<\/span> Sharma<\/span><\/span>, Joji<\/span> Tokita<\/span><\/span>, Jaime<\/span> Uribarri<\/span><\/span>, Joseph A<\/span> Vassalotti<\/span><\/span>, Jonathan<\/span> Winston<\/span><\/span>, Kusum S<\/span> Mathews<\/span><\/span>, Shan<\/span> Zhao<\/span><\/span>, Ishan<\/span> Paranjpe<\/span><\/span>, Sulaiman<\/span> Somani<\/span><\/span>, Felix<\/span> Richter<\/span><\/span>, Ron<\/span> Do<\/span><\/span>, Riccardo<\/span> Miotto<\/span><\/span>, Anuradha<\/span> Lala<\/span><\/span>, Arash<\/span> Kia<\/span><\/span>, Prem<\/span> Timsina<\/span><\/span>, Li<\/span> Li<\/span><\/span>, Matteo<\/span> Danieletto<\/span><\/span>, Eddye<\/span> Golden<\/span><\/span>, Patricia<\/span> Glowe<\/span><\/span>, Micol<\/span> Zweig<\/span><\/span>, Manbir<\/span> Singh<\/span><\/span>, Robert<\/span> Freeman<\/span><\/span>, Rong<\/span> Chen<\/span><\/span>, Eric<\/span> Nestler<\/span><\/span>, Jagat<\/span> Narula<\/span><\/span>, Allan C<\/span> Just<\/span><\/span>, Carol<\/span> Horowitz<\/span><\/span>, Judith<\/span> Aberg<\/span><\/span>, Ruth J.F.<\/span> Loos<\/span><\/span>, Judy<\/span> Cho<\/span><\/span>, Zahi<\/span> Fayad<\/span><\/span>, Carlos<\/span> Cordon-Cardo<\/span><\/span>, Eric<\/span> Schadt<\/span><\/span>, Matthew A<\/span> Levin<\/span><\/span>, David L<\/span> Reich<\/span><\/span>, Valentin<\/span> Fuster<\/span><\/span>, Barbara<\/span> Murphy<\/span><\/span>, John Cijiang<\/span> He<\/span><\/span>, Alexander W<\/span> Charney<\/span><\/span>, Erwin P<\/span> Bottinger<\/span><\/span>, Benjamin S<\/span> Glicksberg<\/span><\/span>, Steven G<\/span> Coca<\/span><\/span>, Girish N<\/span> Nadkarni,\u00a0<\/span><\/span>Acute Kidney Injury in Hospitalized Patients with COVID-19<\/a>,\u00a0doi:<\/span> https:\/\/doi.org\/10.1101\/2020.05.04.20090944<\/span><\/p>\n

Michelle Kang Kim, MD, PhD,\u00a0Loren Galler Rabinowitz, MD,\u00a0Satish Nagula, MD,\u00a0Andrew Dunn, MD,\u00a0Jason Chalil, BA,\u00a0Tao Xu, MD,\u00a0Eric Barna, MD,Beth Raucher, MD,\u00a0David C. Thomas, MD, MHPE &\u00a0Barbara Murphy, MD\u00a0et al.\u00a0<\/a>A Primer for Clinician Deployment to the Medicine Floors from an Epicenter of Covid-19<\/a>. NEJM Catalyst, May 4, 2020.<\/p>\n

2019<\/strong><\/p>\n

Weijia Zhang, Zhengzi Yi, Chengguo Wei, Karen L. Keung, Zeguo Sun, Caixia Xi, Christopher Woytovich, Samira Farouk, Lorenzo Gallon, Madhav C. Menon, Ciara Magee, Nader Najafian, Milagros D. Samaniego, Arjang Djamali, Stephen I. Alexander, Ivy A. Rosales, Rex Neal Smith, Philip J. O\u2019Connell, Robert Colvin, Paolo Cravedi, and Barbara Murphy,\u00a0Pretransplant transcriptomic signature in peripheral blood predicts early acute rejection<\/a>, JCI Insight, June 2019; 4(11): e127543<\/p>\n

Rhodora C. Calizo, Smiti Bhattacharya, J. G. Coen van Hasselt, Chengguo Wei, Jenny S. Wong, Robert J. Wiener, Xuhua Ge, Nicholas J. Wong, Jia-Jye Lee, Christina M. Cuttitta, Gomathi Jayaraman, Vivienne H. Au, William Janssen, Tong Liu, Hong Li, Fadi Salem, Edgar A. Jaimes, Barbara Murphy, Kirk N. Campbell & Evren U. Azeloglu, Disruption of podocyte cytoskeletal biomechanics by dasatinib leads to nephrotoxicity<\/a>, Nature communications, ISSN: 2041-1723, Vol: 10, Issue: 1, Page: 2061\u00a0<\/span><\/p>\n

Weijia Zhang, Zhengzi Yi, Karen L. Keung, Huimin Shang, Chengguo Wei, Paolo Cravedi, Zeguo Sun, Caixia Xi, Christopher Woytovich, Samira Farouk, Weiqing Huang, Khadija Banu, Lorenzo Gallon, Ciara N. Magee, Nader Najafian, Milagros Samaniego, Arjang Djamali, Stephen I. Alexander, Ivy A. Rosales, Rex Neal Smith, Jenny Xiang, Evelyne Lerut, Dirk Kuypers, Maarten Naesens, Philip J. O\u2019Connell, Robert Colvin, Madhav C. Menon and Barbara Murphy,\u00a0A Peripheral Blood Gene Expression Signature to Diagnose Subclinical Acute Rejection<\/a>,\u00a0Journal of the American Society of Nephrology, August 2019, 30 (8) 1481-1494<\/p>\n

Shah S, Shapiro R, Murphy B, Menon MC, APOL1 high-risk genotypes and renal transplantation<\/a>, Clin Transplant. 2019 Jun;33(6):e13582.<\/p>\n

2018<\/strong><\/p>\n

Barbara T. Murphy, MD, Implementing core outcomes in kidney disease: report of the Standardized Outcomes in Nephrology (SONG) implementation workshop<\/a>.\u00a0Kidney International, December 2018, Vol: 94, Issue: 6, Page: 1053-1068<\/p>\n

Barbara T Murphy MD<\/span>;\u00a0<\/span>Steven G. Coca DO<\/span>;\u00a0<\/span>Girish N Nadkarni MD<\/span>;\u00a0<\/span>Madhav C Menon MD<\/span>;\u00a0<\/span>Paolo Cravedi MD, PhD<\/span>;\u00a0<\/span>Kinsuk Chauhan PhD<\/span>;\u00a0<\/span>Peter S Heeger MD<\/span>;\u00a0<\/span>Veronica B Delaney MD, PhD<\/span>;\u00a0<\/span>Rebecca Kent MD<\/span>;\u00a0<\/span>Sander S Florman MD,\u00a0<\/span>Analysis of OPTN\/UNOS registry suggests the number of HLA matches and not mismatches is a stronger independent predictor of kidney transplant survival<\/a>, February 2018, Vol: 93, Issue: 2, Page: 482-490.<\/p>\n

Barbara T. Murphy, MD,\u00a0Establishing a Core Outcome Measure for Graft Health: A Standardized Outcomes in Nephrology-Kidney Transplantation (SONG-Tx) Consensus Workshop Report.<\/a> August 2018,\u00a0Transplantation, \u00a0Vol: 102, Issue: 8, Page: 1358-1366<\/p>\n

Rozemarijn Snoek, Jessica van Setten, Brendan J. Keating, Ajay K. Israni, Pamala A. Jacobson, William S. Oetting, Arthur J. Matas, Roslyn B. Mannon, Zhongyang Zhang, Weijia Zhang, Ke Hao, Barbara Murphy, Roman Reindl-Schwaighofer, Andreas Heinzl, Rainer Oberbauer, Ondrej Viklicky, Peter J. Conlon, Caragh P. Stapleton, Stephan J.L. Bakker, Harold Snieder, Edith D.J. Peters, Bert van der Zwaag, Nine V.A.M. Knoers, Martin H. de Borst and Albertien M. van Eerde,\u00a0NPHP1 (Nephrocystin-1) Gene Deletions Cause Adult-Onset ESRD<\/a>, Journal of the American Society of Nephrology, Vol 29, No. 6, June 2018, 1772-1779.<\/p>\n

Faddoul, Geovani, MD; Nadkarni, Girish, N., MD; Bridges, Nancy, D., MD; Goebel, Jens, MD; Hricik, Donald, E., MD; Formica, Richard, MD; Menon, Madhav, C., MD; Morrison, Yvonne, MS; Murphy, Barbara, MD; Newell, Kenneth, MD; Nickerson, Peter, MD; Poggio, Emilio, D., MD; Rush, David, MD; Heeger, Peter, S., MD for the CTOT-17 consortium, Analysis of Biomarkers Within the Initial 2 Years Posttransplant and 5-Year Kidney Transplant Outcomes: Results From Clinical Trials in Organ Transplantation-17<\/a>, Transplantation<\/em>, April 2018, Volume 102, Issue 4, p. 673-680.<\/p>\n

Rozemarijn Snoek, Jessica van Setten, Brendan J. Jeating, Ajay K. Israni, Pamala A. Jacobson, William S. Oetting, Arthur J. Matas, Rosyln B. Mannon, Zhongyang Zhang, Weijia Zhang, Ke Hao, Barbara Murphy, Roman Reindle-Schwaighofer, Andreas Heinzl, Rainer Oberbauer, Ondrej Viklicky, Peter J. Conlon, Caragh P. Stapleton, Stephan J. L. Bakker, Harold Snieder, Edith Dl.J. Peters, Bert van der Zwaag, Nine V.A.M. Knoers, Martin H. de borst and Albertien M. van Eerde.\u00a0 NPHP1 (Nephrocystin-1) Gene Deletions<\/a> Caus<\/a>e<\/a> Adult-Onset ESRD<\/a>, Journal of the American Society of Nephrology<\/em> (JASN) March 2018<\/p>\n

Barbara T Murphy MD<\/span>;\u00a0<\/span>Madhav C Menon MD<\/span>;\u00a0<\/span>Miguel Fribourg-Casajuana PhD<\/span>;\u00a0<\/span>Paolo Cravedi MD, PhD<\/span>;\u00a0<\/span>Chengguo Wei PhD<\/span>;\u00a0<\/span>Kirk Campbell MD<\/span>;\u00a0<\/span>Khadija Banu PhD<\/span>;\u00a0<\/span>Lewis Kaufman MD,\u00a0<\/span>SHROOM3-FYN Interaction Regulates Nephrin Phosphorylation and Affects Albuminuria in Allografts<\/a>, Journal of the American Society of Nephrology : JASN, ISSN: 1533-3450, Vol: 29, Issue: 11, Page: 2641-2657.<\/p>\n

2017<\/strong><\/p>\n

Li L, Greene I, Readhead B, Menon MC, Kidd BA, Uzilov AV, Wei C, Philippe N, Schroppel B, He JC, Chen R, Dudley JT, Murphy B. \u00a0Novel Therapeutics Identification for Fibrosis in Renal Allograft Using Integrative Informatics Approach.<\/a>\u00a0Sci Rep. 2017 Jan 4;7:39487.<\/p>\n

Wei C, Li L, Menon MC, Zhang W, Fu J, Kidd B, Keung KL, Woytovich C, Greene I, Xiao W, Salem F, Yi Z, He JC, Dudley JT, Murphy B.\u00a0Genomic Analysis of Kidney Allograft Injury Identifies Hematopoietic Cell Kinase as a Key Driver of Renal Fibrosis.<\/a>\u00a0J Am Soc Nephrol. 2017 May;28(5):1385-1393. doi: 10.1681\/ASN.2016020238. Epub 2016 Dec 7.<\/p>\n

The<\/em>Lancet<\/em>: Biopsy transcriptome expression profiling to identify kidney transplants at risk of chronic injury: a multicentre, prospective study
\n<\/a>
\nJ Clin Invest.<\/strong>2014:\u00a0Intronic locus determines SHROOM3 expression and potentiates renal allograft fibrosis<\/a>\u00a0<\/strong><\/p>\n

JCI\u2019s \u201cscientific show-stopper\u201d segment<\/a><\/p>\n

Menon M., Chuang P., Li Z., Wei C., Zhang W., Luan Y., Yi Z., Xiong H., Woytovich C., Greene I., Overbey J., Rosales I., Bagiella E., Chen R., Ma M., Li L.,<\/strong> Ding W., Djamali A., Samaniego-Picota M., O’Connell P., Gallon L., Colvin R., Schr\u00f6ppel B., He J., Murphy B. An expression quantitative trait locus of SHROOM3 contributes to progression of renal allograft fibrosis and decline in renal function. J Clin Invest <\/em><\/strong>2014 Dec 1. pii: 76902. doi: 10.1172\/JCI76902<\/p>\n

Luan Y, Mosheir E, Menon MC, Wilson D, Woytovich C, Ochando J, Murphy B.Monocytic myeloid-derived suppressor cells accumulate in renal transplant patients and mediate CD4(+) Foxp3(+) Treg expansion.\u00a0Am J Transplant. 2013 Dec;13(12):3123-31. doi: 10.1111\/ajt.12461. Epub 2013 Sep 18.<\/p>\n

Stock PG, Barin B, Murphy B, Hanto D, Diego JM, Light J, Davis C, Blumberg E, Simon D, Subramanian A, Millis JM, Lyon GM, Brayman K, Slakey D, Shapiro R, Melancon J, Jacobson JM, Stosor V, Olson JL, Stablein DM, Roland ME. Outcomes of kidney transplantation in HIV-infected recipients. The New England journal of Medicine <\/em>2010 Nov; 363(21).<\/p>\n

Evans RW, Applegate WH, Briscoe DM, Cohen DJ, Rorick CC, Murphy BT, Madsen JC. Cost-related immunosuppressive medication nonadherence among kidney transplant recipients. Clinical journal of the American Society of Nephrology<\/em> : CJASN 2010 Dec; 5(12).<\/p>\n

Gurkan S, Luan Y, Dhillon N, Allam SR, Montague T, Bromberg JS, Ames S, Lerner S, Ebcioglu Z, Nair V, Dinavahi R, Sehgal V, Heeger P, Schroppel B, Murphy B. Immune reconstitution following rabbit antithymocyte globulin. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons<\/em> 2010 Sep; 10(9).<\/p>\n

Humar A, Morris M, Blumberg E, Freeman R, Preiksaitis J, Kiberd B, Schweitzer E, Ganz S, Caliendo A, Orlowski JP, Wilson B, Kotton C, Michaels M, Kleinman S, Geier S, Murphy B, Green M, Levi M, Knoll G, Segev D, Brubaker S, Hasz R, Lebovitz DJ, Mulligan D, O’Connor K, Pruett T, Mozes M, Lee I, Delmonico F, Fischer S. Nucleic acid testing (NAT) of organ donors: is the ‘best’ test the right test? A consensus conference report. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons<\/em> 2010 Apr; 10(4).<\/p>\n

Dhillon N, Walsh L, Kr\u00fcger B, Ward SC, Godbold JH, Radwan M, Schiano T, Murphy BT, Schr\u00f6ppel B. A single nucleotide polymorphism of Toll-like receptor 4 identifies the risk of developing graft failure after liver transplantation. Journal of Hepatology <\/em>2010 Jul; 53(1).<\/p>\n

Dhillon N, Walsh L, Kr\u00fcger B, Mehrotra A, Ward SC, Godbold J, Radwan M, Schiano T, Murphy B, Schr\u00f6ppel B. Complement component C3 allotypes and outcomes in liver transplantation. Liver transplantation : official publication of the American Association for the Study of Liver Diseases and the International Liver Transplantation Society<\/em> 2010 Feb; 16(2).<\/p>\n

Sawinski D, Wyatt CM, Casagrande L, Myoung P, Bijan I, Akalin E, Schr\u00f6ppel B, DeBoccardo G, Sehgal V, Dinavahi R, Lerner S, Ames S, Bromberg J, Huprikar S, Keller M, Murphy B. Factors associated with failure to list HIV-positive kidney transplant candidates. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons<\/em> 2009 Jun; 9(6).<\/p>\n

Kr\u00fcger B, Krick S, Dhillon N, Lerner SM, Ames S, Bromberg JS, Lin M, Walsh L, Vella J, Fischereder M, Kr\u00e4mer BK, Colvin RB, Heeger PS, Murphy BT, Schr\u00f6ppel B. Donor Toll-like receptor 4 contributes to ischemia and reperfusion injury following human kidney transplantation. Proceedings of the National Academy of Sciences of the United States of America 2009 Mar; 106(9).<\/p>\n

<\/div>\n","protected":false},"excerpt":{"rendered":"

Most Recent: 2020 Akhil Vaid1, Sulaiman Somani, Adam J Russak, \u00a0Jessica K De Freitas1,3, Fayzan F\u00a0Chaudhry, Ishan Paranjpe, Kipp W Johnson3, Samuel J Lee, Riccardo Miotto,\u00a0Shan Zhao, Noam D Beckmann, Nidhi Naik, Kodi Arfer, Arash Kia, Prem\u00a0Timsina, Anuradha Lala, Manish Paranjpe, Patricia Glowe, Eddye Golden,\u00a0Matteo Danieletto, Manbir Singh, Dara Meyer, Paul F O\u2019Reilly, Laura H\u00a0Huckins, […]<\/p>\n","protected":false},"author":146,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"open","template":"","meta":{"footnotes":""},"class_list":["post-23","page","type-page","status-publish","hentry"],"aioseo_notices":[],"_links":{"self":[{"href":"https:\/\/labs.icahn.mssm.edu\/murphylab\/wp-json\/wp\/v2\/pages\/23","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/labs.icahn.mssm.edu\/murphylab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/labs.icahn.mssm.edu\/murphylab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/murphylab\/wp-json\/wp\/v2\/users\/146"}],"replies":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/murphylab\/wp-json\/wp\/v2\/comments?post=23"}],"version-history":[{"count":44,"href":"https:\/\/labs.icahn.mssm.edu\/murphylab\/wp-json\/wp\/v2\/pages\/23\/revisions"}],"predecessor-version":[{"id":296,"href":"https:\/\/labs.icahn.mssm.edu\/murphylab\/wp-json\/wp\/v2\/pages\/23\/revisions\/296"}],"wp:attachment":[{"href":"https:\/\/labs.icahn.mssm.edu\/murphylab\/wp-json\/wp\/v2\/media?parent=23"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}