Publications

Most Recent:

2020

Akhil Vaid1, Sulaiman Somani, Adam J Russak,  Jessica K De Freitas1,3, Fayzan F Chaudhry, Ishan Paranjpe, Kipp W Johnson3, Samuel J Lee, Riccardo Miotto, Shan Zhao, Noam D Beckmann, Nidhi Naik, Kodi Arfer, Arash Kia, Prem Timsina, Anuradha Lala, Manish Paranjpe, Patricia Glowe, Eddye Golden, Matteo Danieletto, Manbir Singh, Dara Meyer, Paul F O’Reilly, Laura H Huckins, Patricia Kovatch, Joseph Finkelstein, Robert M Freeman, Edgar Argulian, Andrew Kasarskis, Bethany Percha, Judith A Aberg, Emilia Bagiella, Carol R Horowitz, Barbara Murphy, Eric J Nestler, Eric E Schad, Judy H Cho, Carlos Cordon-Card, Valentin Fuster, Dennis S Charney, David L Reich, Erwin P Bottinger, Matthew A Levin, Jagat Narula, Zahi A Fayad, Allan C Just, Alexander W Charney, Girish N Nadkarni, Benjamin S Glicksberg on behalf of the Mount Sinai Covid Informatics Center (MSCIC).  Machine Learning to Predict Mortality and Critical Events in COVID-19 Positive New York City Patients, https://doi.org/10.1101/2020.04.26.20073411.this version posted April 28, 2020.

Lili Chan, Kumardeep Chaudhary, Aparna Saha, Kinsuk Chauhan, Akhil Vaid, Mukta Baweja, Kirk Campbell, Nicholas Chun, Miriam Chung, Priya Deshpande, Samira S Farouk, Lewis Kaufman, Tonia Kim, Holly Koncicki, Vijay Lapsia, Staci Leisman, Emily Lu, Kristin Meliambro, Madhav C Menon, Joshua L Rein, Shuchita Sharma, Joji Tokita, Jaime Uribarri, Joseph A Vassalotti, Jonathan Winston, Kusum S Mathews, Shan Zhao, Ishan Paranjpe, Sulaiman Somani, Felix Richter, Ron Do, Riccardo Miotto, Anuradha Lala, Arash Kia, Prem Timsina, Li Li, Matteo Danieletto, Eddye Golden, Patricia Glowe, Micol Zweig, Manbir Singh, Robert Freeman, Rong Chen, Eric Nestler, Jagat Narula, Allan C Just, Carol Horowitz, Judith Aberg, Ruth J.F. Loos, Judy Cho, Zahi Fayad, Carlos Cordon-Cardo, Eric Schadt, Matthew A Levin, David L Reich, Valentin Fuster, Barbara Murphy, John Cijiang He, Alexander W Charney, Erwin P Bottinger, Benjamin S Glicksberg, Steven G Coca, Girish N Nadkarni, Acute Kidney Injury in Hospitalized Patients with COVID-19

Michelle Kang Kim, MD, PhD, Loren Galler Rabinowitz, MD, Satish Nagula, MD, Andrew Dunn, MD, Jason Chalil, BA, Tao Xu, MD, Eric Barna, MD,Beth Raucher, MD, David C. Thomas, MD, MHPE & Barbara Murphy, MD et al. A Primer for Clinician Deployment to the Medicine Floors from an Epicenter of Covid-19. NEJM Catalyst, May 4, 2020.

2019

Weijia Zhang, Zhengzi Yi, Chengguo Wei, Karen L. Keung, Zeguo Sun, Caixia Xi, Christopher Woytovich, Samira Farouk, Lorenzo Gallon, Madhav C. Menon, Ciara Magee, Nader Najafian, Milagros D. Samaniego, Arjang Djamali, Stephen I. Alexander, Ivy A. Rosales, Rex Neal Smith, Philip J. O’Connell, Robert Colvin, Paolo Cravedi, and Barbara Murphy, Pretransplant transcriptomic signature in peripheral blood predicts early acute rejection, JCI Insight, June 2019; 4(11): e127543

Rhodora C. Calizo, Smiti Bhattacharya, J. G. Coen van Hasselt, Chengguo Wei, Jenny S. Wong, Robert J. Wiener, Xuhua Ge, Nicholas J. Wong, Jia-Jye Lee, Christina M. Cuttitta, Gomathi Jayaraman, Vivienne H. Au, William Janssen, Tong Liu, Hong Li, Fadi Salem, Edgar A. Jaimes, Barbara Murphy, Kirk N. Campbell & Evren U. Azeloglu, Disruption of podocyte cytoskeletal biomechanics by dasatinib leads to nephrotoxicity, Nature communications, ISSN: 2041-1723, Vol: 10, Issue: 1, Page: 2061 

Weijia Zhang, Zhengzi Yi, Karen L. Keung, Huimin Shang, Chengguo Wei, Paolo Cravedi, Zeguo Sun, Caixia Xi, Christopher Woytovich, Samira Farouk, Weiqing Huang, Khadija Banu, Lorenzo Gallon, Ciara N. Magee, Nader Najafian, Milagros Samaniego, Arjang Djamali, Stephen I. Alexander, Ivy A. Rosales, Rex Neal Smith, Jenny Xiang, Evelyne Lerut, Dirk Kuypers, Maarten Naesens, Philip J. O’Connell, Robert Colvin, Madhav C. Menon and Barbara Murphy, A Peripheral Blood Gene Expression Signature to Diagnose Subclinical Acute Rejection, Journal of the American Society of Nephrology, August 2019, 30 (8) 1481-1494

Shah S, Shapiro R, Murphy B, Menon MC, APOL1 high-risk genotypes and renal transplantation, Clin Transplant. 2019 Jun;33(6):e13582.

2018

Barbara T. Murphy, MD, Implementing core outcomes in kidney disease: report of the Standardized Outcomes in Nephrology (SONG) implementation workshop. Kidney International, December 2018, Vol: 94, Issue: 6, Page: 1053-1068

Barbara T Murphy MDSteven G. Coca DOGirish N Nadkarni MDMadhav C Menon MDPaolo Cravedi MD, PhDKinsuk Chauhan PhDPeter S Heeger MDVeronica B Delaney MD, PhDRebecca Kent MDSander S Florman MD, Analysis of OPTN/UNOS registry suggests the number of HLA matches and not mismatches is a stronger independent predictor of kidney transplant survival, February 2018, Vol: 93, Issue: 2, Page: 482-490.

Barbara T. Murphy, MD, Establishing a Core Outcome Measure for Graft Health: A Standardized Outcomes in Nephrology-Kidney Transplantation (SONG-Tx) Consensus Workshop Report. August 2018, Transplantation,  Vol: 102, Issue: 8, Page: 1358-1366

Rozemarijn Snoek, Jessica van Setten, Brendan J. Keating, Ajay K. Israni, Pamala A. Jacobson, William S. Oetting, Arthur J. Matas, Roslyn B. Mannon, Zhongyang Zhang, Weijia Zhang, Ke Hao, Barbara Murphy, Roman Reindl-Schwaighofer, Andreas Heinzl, Rainer Oberbauer, Ondrej Viklicky, Peter J. Conlon, Caragh P. Stapleton, Stephan J.L. Bakker, Harold Snieder, Edith D.J. Peters, Bert van der Zwaag, Nine V.A.M. Knoers, Martin H. de Borst and Albertien M. van Eerde, NPHP1 (Nephrocystin-1) Gene Deletions Cause Adult-Onset ESRD, Journal of the American Society of Nephrology, Vol 29, No. 6, June 2018, 1772-1779.

Faddoul, Geovani, MD; Nadkarni, Girish, N., MD; Bridges, Nancy, D., MD; Goebel, Jens, MD; Hricik, Donald, E., MD; Formica, Richard, MD; Menon, Madhav, C., MD; Morrison, Yvonne, MS; Murphy, Barbara, MD; Newell, Kenneth, MD; Nickerson, Peter, MD; Poggio, Emilio, D., MD; Rush, David, MD; Heeger, Peter, S., MD for the CTOT-17 consortium, Analysis of Biomarkers Within the Initial 2 Years Posttransplant and 5-Year Kidney Transplant Outcomes: Results From Clinical Trials in Organ Transplantation-17, Transplantation, April 2018, Volume 102, Issue 4, p. 673-680.

Rozemarijn Snoek, Jessica van Setten, Brendan J. Jeating, Ajay K. Israni, Pamala A. Jacobson, William S. Oetting, Arthur J. Matas, Rosyln B. Mannon, Zhongyang Zhang, Weijia Zhang, Ke Hao, Barbara Murphy, Roman Reindle-Schwaighofer, Andreas Heinzl, Rainer Oberbauer, Ondrej Viklicky, Peter J. Conlon, Caragh P. Stapleton, Stephan J. L. Bakker, Harold Snieder, Edith Dl.J. Peters, Bert van der Zwaag, Nine V.A.M. Knoers, Martin H. de borst and Albertien M. van Eerde.  NPHP1 (Nephrocystin-1) Gene Deletions Cause Adult-Onset ESRD, Journal of the American Society of Nephrology (JASN) March 2018

Barbara T Murphy MDMadhav C Menon MDMiguel Fribourg-Casajuana PhDPaolo Cravedi MD, PhDChengguo Wei PhDKirk Campbell MDKhadija Banu PhDLewis Kaufman MD, SHROOM3-FYN Interaction Regulates Nephrin Phosphorylation and Affects Albuminuria in Allografts, Journal of the American Society of Nephrology : JASN, ISSN: 1533-3450, Vol: 29, Issue: 11, Page: 2641-2657.

2017

Li L, Greene I, Readhead B, Menon MC, Kidd BA, Uzilov AV, Wei C, Philippe N, Schroppel B, He JC, Chen R, Dudley JT, Murphy B.  Novel Therapeutics Identification for Fibrosis in Renal Allograft Using Integrative Informatics Approach. Sci Rep. 2017 Jan 4;7:39487.

Wei C, Li L, Menon MC, Zhang W, Fu J, Kidd B, Keung KL, Woytovich C, Greene I, Xiao W, Salem F, Yi Z, He JC, Dudley JT, Murphy B. Genomic Analysis of Kidney Allograft Injury Identifies Hematopoietic Cell Kinase as a Key Driver of Renal Fibrosis. J Am Soc Nephrol. 2017 May;28(5):1385-1393. doi: 10.1681/ASN.2016020238. Epub 2016 Dec 7.

TheLancet: Biopsy transcriptome expression profiling to identify kidney transplants at risk of chronic injury: a multicentre, prospective study

J Clin Invest.2014: Intronic locus determines SHROOM3 expression and potentiates renal allograft fibrosis 

JCI’s “scientific show-stopper” segment

Menon M., Chuang P., Li Z., Wei C., Zhang W., Luan Y., Yi Z., Xiong H., Woytovich C., Greene I., Overbey J., Rosales I., Bagiella E., Chen R., Ma M., Li L., Ding W., Djamali A., Samaniego-Picota M., O’Connell P., Gallon L., Colvin R., Schröppel B., He J., Murphy B. An expression quantitative trait locus of SHROOM3 contributes to progression of renal allograft fibrosis and decline in renal function. J Clin Invest 2014 Dec 1. pii: 76902. doi: 10.1172/JCI76902

Luan Y, Mosheir E, Menon MC, Wilson D, Woytovich C, Ochando J, Murphy B.Monocytic myeloid-derived suppressor cells accumulate in renal transplant patients and mediate CD4(+) Foxp3(+) Treg expansion. Am J Transplant. 2013 Dec;13(12):3123-31. doi: 10.1111/ajt.12461. Epub 2013 Sep 18.

Stock PG, Barin B, Murphy B, Hanto D, Diego JM, Light J, Davis C, Blumberg E, Simon D, Subramanian A, Millis JM, Lyon GM, Brayman K, Slakey D, Shapiro R, Melancon J, Jacobson JM, Stosor V, Olson JL, Stablein DM, Roland ME. Outcomes of kidney transplantation in HIV-infected recipients. The New England journal of Medicine 2010 Nov; 363(21).

Evans RW, Applegate WH, Briscoe DM, Cohen DJ, Rorick CC, Murphy BT, Madsen JC. Cost-related immunosuppressive medication nonadherence among kidney transplant recipients. Clinical journal of the American Society of Nephrology : CJASN 2010 Dec; 5(12).

Gurkan S, Luan Y, Dhillon N, Allam SR, Montague T, Bromberg JS, Ames S, Lerner S, Ebcioglu Z, Nair V, Dinavahi R, Sehgal V, Heeger P, Schroppel B, Murphy B. Immune reconstitution following rabbit antithymocyte globulin. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons 2010 Sep; 10(9).

Humar A, Morris M, Blumberg E, Freeman R, Preiksaitis J, Kiberd B, Schweitzer E, Ganz S, Caliendo A, Orlowski JP, Wilson B, Kotton C, Michaels M, Kleinman S, Geier S, Murphy B, Green M, Levi M, Knoll G, Segev D, Brubaker S, Hasz R, Lebovitz DJ, Mulligan D, O’Connor K, Pruett T, Mozes M, Lee I, Delmonico F, Fischer S. Nucleic acid testing (NAT) of organ donors: is the ‘best’ test the right test? A consensus conference report. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons 2010 Apr; 10(4).

Dhillon N, Walsh L, Krüger B, Ward SC, Godbold JH, Radwan M, Schiano T, Murphy BT, Schröppel B. A single nucleotide polymorphism of Toll-like receptor 4 identifies the risk of developing graft failure after liver transplantation. Journal of Hepatology 2010 Jul; 53(1).

Dhillon N, Walsh L, Krüger B, Mehrotra A, Ward SC, Godbold J, Radwan M, Schiano T, Murphy B, Schröppel B. Complement component C3 allotypes and outcomes in liver transplantation. Liver transplantation : official publication of the American Association for the Study of Liver Diseases and the International Liver Transplantation Society 2010 Feb; 16(2).

Sawinski D, Wyatt CM, Casagrande L, Myoung P, Bijan I, Akalin E, Schröppel B, DeBoccardo G, Sehgal V, Dinavahi R, Lerner S, Ames S, Bromberg J, Huprikar S, Keller M, Murphy B. Factors associated with failure to list HIV-positive kidney transplant candidates. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons 2009 Jun; 9(6).

Krüger B, Krick S, Dhillon N, Lerner SM, Ames S, Bromberg JS, Lin M, Walsh L, Vella J, Fischereder M, Krämer BK, Colvin RB, Heeger PS, Murphy BT, Schröppel B. Donor Toll-like receptor 4 contributes to ischemia and reperfusion injury following human kidney transplantation. Proceedings of the National Academy of Sciences of the United States of America 2009 Mar; 106(9).