{"id":2407,"date":"2022-08-24T09:16:02","date_gmt":"2022-08-24T13:16:02","guid":{"rendered":"https:\/\/labs.icahn.mssm.edu\/msdw\/?p=2407"},"modified":"2022-08-24T09:16:02","modified_gmt":"2022-08-24T13:16:02","slug":"new-cancer-patient-cohort-available","status":"publish","type":"post","link":"https:\/\/labs.icahn.mssm.edu\/msdw\/new-cancer-patient-cohort-available\/","title":{"rendered":"New Cancer Patient Cohort Available"},"content":{"rendered":"<p>The Mount Sinai Data Warehouse team is pleased to announce the addition of a new cancer patient cohort to <a href=\"https:\/\/labs.icahn.mssm.edu\/msdw\/about-us\/\">MSDW<\/a> and its <a href=\"https:\/\/leaf.mssm.edu\/\">Leaf<\/a> and <a href=\"https:\/\/atlas.msdw.mountsinai.org\/\">ATLAS<\/a> cohort query tools.<\/p>\n<p>&nbsp;<\/p>\n<p>This \u201cpre-calculated\u201d cohort comprises all Mount Sinai patients with a diagnosis in Epic that maps to a cancer-related ICD-9, ICD-10, or SNOMED code.<\/p>\n<p>&nbsp;<\/p>\n<p>Like the other such patient cohorts in MSDW, this new cohort is intended to be a convenient base population to which you may apply your own additional inclusion and exclusion criteria.\u00a0 Of course, usage of these cohorts is entirely optional.<\/p>\n<p>&nbsp;<\/p>\n<p>The \u201cpre-calculated\u201d patient cohorts in MSDW and available in the Leaf and ATLAS cohort query tools now include the following:<\/p>\n<p>&nbsp;<\/p>\n<ol>\n<li>Cancer Patient Cohort<\/li>\n<li>BioMe BioBank<\/li>\n<li>Cancer Institute Biorepository<\/li>\n<li>Imaging Research Warehouse 1.0<\/li>\n<\/ol>\n<p>&nbsp;<\/p>\n<p>Please visit the <a href=\"https:\/\/labs.icahn.mssm.edu\/msdw\/\">Mount Sinai Data Warehouse website<\/a> for <a href=\"https:\/\/labs.icahn.mssm.edu\/msdw\/tutorials\/\">tutorials on Leaf and ATLAS<\/a>, as well as for more information about <a href=\"https:\/\/labs.icahn.mssm.edu\/msdw\/open-a-ticket\/\">requesting help from the Scientific Computing team<\/a>.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>The Mount Sinai Data Warehouse team is pleased to announce the addition of a new cancer patient cohort to MSDW and its Leaf and ATLAS cohort query tools. &nbsp; This \u201cpre-calculated\u201d cohort comprises all Mount Sinai patients with a diagnosis in Epic that maps to a cancer-related ICD-9, ICD-10, or SNOMED code. &nbsp; Like the [&hellip;]<\/p>\n","protected":false},"author":600,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_et_pb_use_builder":"","_et_pb_old_content":"","_et_gb_content_width":"","footnotes":""},"categories":[5],"tags":[],"class_list":["post-2407","post","type-post","status-publish","format-standard","hentry","category-status-update"],"aioseo_notices":[],"_links":{"self":[{"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/posts\/2407","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/users\/600"}],"replies":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/comments?post=2407"}],"version-history":[{"count":1,"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/posts\/2407\/revisions"}],"predecessor-version":[{"id":2408,"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/posts\/2407\/revisions\/2408"}],"wp:attachment":[{"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/media?parent=2407"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/categories?post=2407"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/tags?post=2407"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}