{"id":2063,"date":"2022-05-03T10:51:36","date_gmt":"2022-05-03T14:51:36","guid":{"rendered":"https:\/\/labs.icahn.mssm.edu\/msdw\/?p=2063"},"modified":"2022-05-03T11:27:06","modified_gmt":"2022-05-03T15:27:06","slug":"biome-irw-2022","status":"publish","type":"post","link":"https:\/\/labs.icahn.mssm.edu\/msdw\/biome-irw-2022\/","title":{"rendered":"Self-service cohort building now available for BioMe and the Imaging Research Warehouse 1.0"},"content":{"rendered":"<p>Researchers can now build cohorts specific to the\u00a0<a href=\"https:\/\/bmeiisinai.org\/imaging-research-warehouse\/\">Imaging Research Warehouse (IRW) 1.0<\/a>\u00a0and the\u00a0<a href=\"https:\/\/icahn.mssm.edu\/research\/ipm\/programs\/biome-biobank\/researcher-faqs\">BioMe BioBank Program<\/a>\u00a0using the\u00a0<a href=\"https:\/\/labs.icahn.mssm.edu\/msdw\/\">Mount Sinai Data Warehouse<\/a>\u2019s (MSDW) self-service Electronic Health Record cohort building tool,\u00a0<a href=\"https:\/\/labs.icahn.mssm.edu\/msdw\/about-leaf\/\">Leaf<\/a>.<\/p>\n<p>&nbsp;<\/p>\n<p>The\u00a0<a href=\"https:\/\/bmeiisinai.org\/imaging-research-warehouse\/\">Imaging Research Warehouse (IRW) 1.0<\/a> \u00a0contains over 217 million de-identified image slices for over 700,00 MSHS studies from 2017-2021. Image modalities include DX (Digital Radiography), CT (Computed Tomography), CR (Computed Radiography), MR (Magnetic Resonance), MG (Mammography) and NM (Nuclear Medicine). All images are available on <a href=\"https:\/\/labs.icahn.mssm.edu\/minervalab\/%5d\">the Minerva Supercomputer<\/a>\u00a0and ready for computation and analysis.<\/p>\n<p>&nbsp;<\/p>\n<p>The\u00a0Bio<em>Me<\/em>,<a href=\"https:\/\/icahn.mssm.edu\/research\/ipm\/programs\/biome-biobank\/researcher-faqs\">\u00a0BioBank Program<\/a>\u00a0is\u00a0an electronic medical record-linked blood\/serum biobank with over 50,000 enrolled participants. Genetic, epidemiologic and molecular data are available on these participants, including whole exome sequencing data (WES) for a\u00a0diverse cohort of individuals from over 30,000 with many ancestral and cultural backgrounds. The WES data is available on\u00a0<a href=\"https:\/\/labs.icahn.mssm.edu\/minervalab\/%5d\">the Minerva Supercomputer<\/a>\u00a0and ready for computation and analysis.<\/p>\n<p>&nbsp;<\/p>\n<p>The Electronic Health Record (EHR) data on\u00a0<a href=\"https:\/\/labs.icahn.mssm.edu\/msdw\/\">MSDW<\/a>, the IRW 1.0 images and the WES data are all located on\u00a0<a href=\"https:\/\/labs.icahn.mssm.edu\/minervalab\/%5d\">the Minerva Supercomputer<\/a>. Minerva has over 2,000 applications available along with a team of computational scientists to help you build multi-scale models using genomic, imaging, EHR and other data types.<\/p>\n<p>&nbsp;<\/p>\n<p><a href=\"https:\/\/labs.icahn.mssm.edu\/msdw\/about-leaf\/\">Leaf<\/a> can help you develop, visualize and export cohorts, using ICD-10 codes and a range of standard healthcare terminologies, and it is available to all Mount Sinai Health System. To get started with your own Leaf account, <a href=\"https:\/\/labs.icahn.mssm.edu\/msdw\/about-leaf\/\">click here<\/a>.<\/p>\n<p>&nbsp;<\/p>\n<p>Scientific Computing and Data is hosting an introductory application training for Leaf on Wednesday, May 4, from 12:00-12:30 pm. To register for the training and to see more details,\u00a0<a href=\"https:\/\/redcap.mountsinai.org\/redcap\/surveys\/?s=RXAP4KH4FJNNF9KA\">click here<\/a>.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Researchers can now build cohorts specific to the\u00a0Imaging Research Warehouse (IRW) 1.0\u00a0and the\u00a0BioMe BioBank Program\u00a0using the\u00a0Mount Sinai Data Warehouse\u2019s (MSDW) self-service Electronic Health Record cohort building tool,\u00a0Leaf. &nbsp; The\u00a0Imaging Research Warehouse (IRW) 1.0 \u00a0contains over 217 million de-identified image slices for over 700,00 MSHS studies from 2017-2021. Image modalities include DX (Digital Radiography), CT (Computed [&hellip;]<\/p>\n","protected":false},"author":600,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_et_pb_use_builder":"","_et_pb_old_content":"","_et_gb_content_width":"","footnotes":""},"categories":[5],"tags":[],"class_list":["post-2063","post","type-post","status-publish","format-standard","hentry","category-status-update"],"aioseo_notices":[],"_links":{"self":[{"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/posts\/2063","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/users\/600"}],"replies":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/comments?post=2063"}],"version-history":[{"count":3,"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/posts\/2063\/revisions"}],"predecessor-version":[{"id":2068,"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/posts\/2063\/revisions\/2068"}],"wp:attachment":[{"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/media?parent=2063"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/categories?post=2063"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/tags?post=2063"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}