{"id":1843,"date":"2022-03-30T14:24:56","date_gmt":"2022-03-30T18:24:56","guid":{"rendered":"https:\/\/labs.icahn.mssm.edu\/msdw\/?page_id=1843"},"modified":"2026-10-23T10:55:39","modified_gmt":"2026-10-23T14:55:39","slug":"about-data-marts","status":"publish","type":"page","link":"https:\/\/labs.icahn.mssm.edu\/msdw\/about-data-marts\/","title":{"rendered":"About OMOP Data Marts"},"content":{"rendered":"<p>[et_pb_section bb_built=&#8221;1&#8243; _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221; custom_padding=&#8221;0px||0px||false|false&#8221; next_background_color=&#8221;#000000&#8243;][et_pb_row _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221; custom_padding=&#8221;||0px||false|false&#8221;][et_pb_column type=&#8221;4_4&#8243; _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221;][et_pb_text admin_label=&#8221;Breadcrumb&#8221; _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221;]<\/p>\n<p><a href=\"https:\/\/labs.icahn.mssm.edu\/minervalab\/scientific-computing-and-data\">Scientific Computing and Data<\/a>\u00a0\/\u00a0<a href=\"https:\/\/labs.icahn.mssm.edu\/msdw\">Mount Sinai Data Warehouse<\/a> \/ About OMOP Data Marts<\/p>\n<p>[\/et_pb_text][\/et_pb_column][\/et_pb_row][\/et_pb_section][et_pb_section bb_built=&#8221;1&#8243; specialty=&#8221;on&#8221; _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221; custom_padding=&#8221;0px||||false|false&#8221; prev_background_color=&#8221;#000000&#8243;][et_pb_column type=&#8221;1_4&#8243;][et_pb_image admin_label=&#8221;Icon: Data Marts&#8221; src=&#8221;https:\/\/labs.icahn.mssm.edu\/msdw\/wp-content\/uploads\/sites\/350\/2022\/03\/data-marts-1024&#215;1024.png&#8221; title_text=&#8221;data marts&#8221; _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221;]<\/p>\n<p><\/p>\n<p>[\/et_pb_image][\/et_pb_column][et_pb_column type=&#8221;3_4&#8243; specialty_columns=&#8221;3&#8243;][et_pb_row_inner _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221;][et_pb_column_inner type=&#8221;undefined&#8221; saved_specialty_column_type=&#8221;3_4&#8243; _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221; saved_specialty_column_type=&#8221;3_4&#8243;][et_pb_text admin_label=&#8221;About OMOP Data Marts&#8221; 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header_4_text_shadow_vertical_length=&#8221;header_4_text_shadow_style,%91object Object%93&#8243; header_4_text_shadow_vertical_length_tablet=&#8221;0px&#8221; header_4_text_shadow_blur_strength=&#8221;header_4_text_shadow_style,%91object Object%93&#8243; header_4_text_shadow_blur_strength_tablet=&#8221;1px&#8221; header_5_text_shadow_horizontal_length=&#8221;header_5_text_shadow_style,%91object Object%93&#8243; header_5_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; header_5_text_shadow_vertical_length=&#8221;header_5_text_shadow_style,%91object Object%93&#8243; header_5_text_shadow_vertical_length_tablet=&#8221;0px&#8221; header_5_text_shadow_blur_strength=&#8221;header_5_text_shadow_style,%91object Object%93&#8243; header_5_text_shadow_blur_strength_tablet=&#8221;1px&#8221; header_6_text_shadow_horizontal_length=&#8221;header_6_text_shadow_style,%91object Object%93&#8243; header_6_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; header_6_text_shadow_vertical_length=&#8221;header_6_text_shadow_style,%91object Object%93&#8243; header_6_text_shadow_vertical_length_tablet=&#8221;0px&#8221; header_6_text_shadow_blur_strength=&#8221;header_6_text_shadow_style,%91object Object%93&#8243; header_6_text_shadow_blur_strength_tablet=&#8221;1px&#8221; box_shadow_horizontal_tablet=&#8221;0px&#8221; box_shadow_vertical_tablet=&#8221;0px&#8221; box_shadow_blur_tablet=&#8221;40px&#8221; box_shadow_spread_tablet=&#8221;0px&#8221; vertical_offset_tablet=&#8221;0&#8243; horizontal_offset_tablet=&#8221;0&#8243; z_index_tablet=&#8221;0&#8243;]<\/p>\n<h1>About OMOP Data Marts<\/h1>\n<p>These OMOP data marts can save researchers&#8217; time otherwise spent collecting or correcting data.\u00a0 Their efficiency is maximized through repeated use.<\/p>\n<p>The MSDW team can provide access to your custom data mart via ATLAS or via a direct connection to the MSDW database on Minerva.<\/p>\n<p>Each data mart is customized to your cohort inclusion criteria:<\/p>\n<ul>\n<li>Identified or de-identified or both<\/li>\n<li>Updated dynamically or static cohort<\/li>\n<\/ul>\n<p>Patients&#8217; membership in your cohort can be either static or recomputed dynamically as new data are loaded to MSDW.<\/p>\n<p>The MSDW team can offer you a PHI or de-identified version of your OMOP data mart, or both!<\/p>\n<p><a href=\"https:\/\/labs.icahn.mssm.edu\/msdw\/msdw2-direct-database-access\/\">Click here<\/a> for additional information on obtaining direct database access to MSDW&#8217;s OMOP data marts.<\/p>\n<p>\u00a0<\/p>\n<h2>Custom Data Mart<\/h2>\n<p>Your custom OMOP data mart is built using a patient cohort defined by your research study&#8217;s inclusion and\/or exclusion criteria. The OMOP data mart can contain PHI data, de-identified data, or both for your patient cohort of interest.<\/p>\n<p>To compare Custom Data Marts to the other MSDW services, <a href=\"https:\/\/labs.icahn.mssm.edu\/msdw\/services\/\">click here<\/a>.<\/p>\n<p>If you&#8217;re ready to request your custom data mart, <a href=\"https:\/\/scicomp.atlassian.net\/servicedesk\/customer\/portal\/2\">open a ticket here<\/a>.<\/p>\n<p><a href=\"https:\/\/labs.icahn.mssm.edu\/msdw\/msdw2-direct-database-access\/\">Click here<\/a> to read more on how to access these curated data marts.<\/p>\n<p>\u00a0<\/p>\n<p>\u00a0<\/p>\n<h1>Data Mart Quick Links<\/h1>\n<ul>\n<li><a href=\"https:\/\/scicomp.atlassian.net\/servicedesk\/customer\/portal\/2\">Request a Custom Data Mart<\/a><\/li>\n<li><a href=\"https:\/\/labs.icahn.mssm.edu\/msdw\/msdw2-direct-database-access\/\">Request Database Access to Data Mart<\/a><\/li>\n<li><a href=\"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-content\/uploads\/sites\/350\/2021\/10\/MSDW2-Database-Access-Agreement.pdf\">MSDW Direct Access Agreement<\/a><\/li>\n<li><a href=\"https:\/\/labs.icahn.mssm.edu\/msdw\/data-dictionary\/\">Tools for OMOP<\/a><\/li>\n<li><a href=\"https:\/\/scicomp.atlassian.net\/servicedesk\/customer\/portal\/2\/user\/login?destination=portal%2F2\">Submit a Ticket<\/a><\/li>\n<\/ul>\n<p>[\/et_pb_text][\/et_pb_column_inner][\/et_pb_row_inner][\/et_pb_column][\/et_pb_section]<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Scientific Computing and Data\u00a0\/\u00a0Mount Sinai Data Warehouse \/ About OMOP Data Marts About OMOP Data MartsThese OMOP data marts can save researchers&#8217; time otherwise spent collecting or correcting data.\u00a0 Their efficiency is maximized through repeated use.The MSDW team can provide access to your custom data mart via ATLAS or via a direct connection to the [&hellip;]<\/p>\n","protected":false},"author":600,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_et_pb_use_builder":"on","_et_pb_old_content":"","_et_gb_content_width":"","footnotes":""},"class_list":["post-1843","page","type-page","status-publish","hentry"],"aioseo_notices":[],"_links":{"self":[{"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/pages\/1843","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/users\/600"}],"replies":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/comments?post=1843"}],"version-history":[{"count":19,"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/pages\/1843\/revisions"}],"predecessor-version":[{"id":3983,"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/pages\/1843\/revisions\/3983"}],"wp:attachment":[{"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/media?parent=1843"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}