{"id":1278,"date":"2021-10-27T10:49:32","date_gmt":"2021-10-27T14:49:32","guid":{"rendered":"https:\/\/labs.icahn.mssm.edu\/msdw\/?page_id=1278"},"modified":"2025-06-09T11:34:19","modified_gmt":"2025-06-09T15:34:19","slug":"atlas-application-status","status":"publish","type":"page","link":"https:\/\/labs.icahn.mssm.edu\/msdw\/atlas-application-status\/","title":{"rendered":"ATLAS Application Status"},"content":{"rendered":"<p>[et_pb_section fb_built=&#8221;1&#8243; _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221; custom_padding=&#8221;0px||0px||false|false&#8221;][et_pb_row _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221;][et_pb_column type=&#8221;4_4&#8243; _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221;][et_pb_text admin_label=&#8221;Breadcrumb&#8221; _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221;]<\/p>\n<p><a href=\"https:\/\/labs.icahn.mssm.edu\/minervalab\/scientific-computing-and-data\">Scientific Computing and Data<\/a>\u00a0\/\u00a0<a href=\"https:\/\/labs.icahn.mssm.edu\/msdw\">Mount Sinai Data Warehouse<\/a> \/ <a href=\"https:\/\/atlas.msdw.mountsinai.org\/\">ATLAS<\/a> \/ ATLAS Application and Roadmap<\/p>\n<p>[\/et_pb_text][\/et_pb_column][\/et_pb_row][\/et_pb_section][et_pb_section fb_built=&#8221;1&#8243; specialty=&#8221;on&#8221; _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221; custom_padding=&#8221;0px||||false|false&#8221;][et_pb_column type=&#8221;3_4&#8243; specialty_columns=&#8221;3&#8243; _builder_version=&#8221;3.25&#8243; custom_padding=&#8221;|||&#8221; custom_padding__hover=&#8221;|||&#8221;][et_pb_row_inner _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221; custom_padding=&#8221;0px||||false|false&#8221;][et_pb_column_inner saved_specialty_column_type=&#8221;3_4&#8243; _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221;][et_pb_text _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221; header_font=&#8221;|600|||||||&#8221; header_text_color=&#8221;#221f72&#8243; header_3_text_color=&#8221;#221f72&#8243; hover_enabled=&#8221;0&#8243; sticky_enabled=&#8221;0&#8243;]<\/p>\n<h1>ATLAS Application Status and Roadmap<\/h1>\n<p><strong>Last Updated: December 27, 2022<\/strong><\/p>\n<p>&nbsp;<\/p>\n<h3>Status<\/h3>\n<p><strong>Scheduled maintenance<\/strong> to ATLAS will take place on Wednesday<strong>, January 11, from 5:00 to 7:00 pm, <\/strong>to fix security vulnerabilities and apply some bug fixes in critical systems software. All system access will be affected and service will be interrupted at that time. Please plan your work ahead of time and log out of the application during scheduled maintenance.<\/p>\n<p><a href=\"https:\/\/atlas.msdw.mountsinai.org\/\">ATLAS<\/a> application is currently in software version 1 at Mount Sinai and is available for user testing. Features and functionality are regularly updated, and scheduled maintenance is announced in advance through\u00a0<a href=\"https:\/\/msdw.mountsinai.org\/\">msdw.mountsinai.org<\/a>.<\/p>\n<p>&nbsp;<\/p>\n<p>As of December 2021, all ATLAS functions (left-hand tabs) are available to users.<\/p>\n<p>ATLAS functionality is currently limited to include:<\/p>\n<ul>\n<li>De-identified data source only<\/li>\n<li>OMOP standard concept IDs are contained within only the following clinical domains: conditions, procedures, visits, vitals measurements<\/li>\n<li>All other domains can be queried using concepts in Epic vocabularies<\/li>\n<\/ul>\n<p>ATLAS beta contains the following limitations:<\/p>\n<ul>\n<li>Data containing PHI, including datamarts, are not yet available for query<\/li>\n<li>Most ATLAS data uses OMOP standard concept IDs, but some live data uses non-standard vocabularies<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<h3>Roadmap<\/h3>\n<p>The following improvements to ATLAS are planned for the 4th quarter of 2021:<\/p>\n<ul>\n<li>Add four datamarts containing PHI: BioMe, Anal Cancer, Liver, and iSite<\/li>\n<li>Enhance ATLAS deployment process to support ATLAS users<\/li>\n<\/ul>\n<p>Thank you for providing feedback in ATLAS&#8217; beta release. Read <a href=\"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-content\/uploads\/sites\/350\/2021\/09\/ATLAS-User-Process-Guide-1.pdf\">ATLAS&#8217; Tutorial<\/a> for usage documentation. If you are experiencing an access issue or error within the application, please <a href=\"https:\/\/scicomp.atlassian.net\/servicedesk\/customer\/portal\/3\">submit a ticket<\/a>.<\/p>\n<p>[\/et_pb_text][\/et_pb_column_inner][\/et_pb_row_inner][\/et_pb_column][et_pb_column type=&#8221;1_4&#8243; _builder_version=&#8221;3.25&#8243; custom_padding=&#8221;|||&#8221; custom_padding__hover=&#8221;|||&#8221;][et_pb_image src=&#8221;https:\/\/labs.icahn.mssm.edu\/msdw\/wp-content\/uploads\/sites\/350\/2021\/09\/atlas.png&#8221; title_text=&#8221;atlas&#8221; _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221;][\/et_pb_image][\/et_pb_column][\/et_pb_section]<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Scientific Computing and Data\u00a0\/\u00a0Mount Sinai Data Warehouse \/ ATLAS \/ ATLAS Application and RoadmapATLAS Application Status and Roadmap Last Updated: December 27, 2022 &nbsp; Status Scheduled maintenance to ATLAS will take place on Wednesday, January 11, from 5:00 to 7:00 pm, to fix security vulnerabilities and apply some bug fixes in critical systems software. All [&hellip;]<\/p>\n","protected":false},"author":600,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_et_pb_use_builder":"on","_et_pb_old_content":"","_et_gb_content_width":"","footnotes":""},"class_list":["post-1278","page","type-page","status-publish","hentry"],"aioseo_notices":[],"_links":{"self":[{"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/pages\/1278","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/users\/600"}],"replies":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/comments?post=1278"}],"version-history":[{"count":25,"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/pages\/1278\/revisions"}],"predecessor-version":[{"id":3687,"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/pages\/1278\/revisions\/3687"}],"wp:attachment":[{"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/media?parent=1278"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}