{"id":1234,"date":"2021-10-26T10:14:39","date_gmt":"2021-10-26T14:14:39","guid":{"rendered":"https:\/\/labs.icahn.mssm.edu\/msdw\/?page_id=1234"},"modified":"2025-06-09T12:32:34","modified_gmt":"2025-06-09T16:32:34","slug":"msdw2-direct-database-access","status":"publish","type":"page","link":"https:\/\/labs.icahn.mssm.edu\/msdw\/msdw2-direct-database-access\/","title":{"rendered":"MSDW2 Direct Database Access"},"content":{"rendered":"<p>[et_pb_section fb_built=&#8221;1&#8243; _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221; custom_padding=&#8221;0px||0px||false|false&#8221;][et_pb_row _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221; custom_padding=&#8221;||0px||false|false&#8221;][et_pb_column type=&#8221;4_4&#8243; _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221;][et_pb_text admin_label=&#8221;Breadcrumb&#8221; _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221;]<\/p>\n<p><a href=\"https:\/\/labs.icahn.mssm.edu\/minervalab\/scientific-computing-and-data\">Scientific Computing and Data<\/a>\u00a0\/\u00a0<a href=\"https:\/\/labs.icahn.mssm.edu\/msdw\">Mount Sinai Data Warehouse<\/a> \/ Direct Access to MSDW2<\/p>\n<p>[\/et_pb_text][\/et_pb_column][\/et_pb_row][\/et_pb_section][et_pb_section fb_built=&#8221;1&#8243; specialty=&#8221;on&#8221; _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221;][et_pb_column type=&#8221;2_3&#8243; specialty_columns=&#8221;2&#8243; _builder_version=&#8221;3.25&#8243; custom_padding=&#8221;|||&#8221; custom_padding__hover=&#8221;|||&#8221;][et_pb_row_inner _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221;][et_pb_column_inner saved_specialty_column_type=&#8221;2_3&#8243; _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221;][et_pb_text _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221; header_font=&#8221;|600|||||||&#8221; header_text_color=&#8221;#221f72&#8243; header_2_text_color=&#8221;#00aeef&#8221; header_2_font_size=&#8221;24px&#8221; header_3_text_color=&#8221;#221f72&#8243; hover_enabled=&#8221;0&#8243; sticky_enabled=&#8221;0&#8243;]<\/p>\n<h1>Mount Sinai Data Warehouse Direct Access<\/h1>\n<p>For those researchers who meet the criteria in the MSDW Direct Database Access Agreement, the MSDW team can provision your direct access to your OMOP data mart in Microsoft SQL Server.<\/p>\n<p>Don&#8217;t have an OMOP Data Mart? Consider <a href=\"https:\/\/labs.icahn.mssm.edu\/msdw\/services\/#10step\">requesting a custom data report<\/a> from the MSDW Analyst team or utilizing one of the <a href=\"https:\/\/labs.icahn.mssm.edu\/msdw\/services\/\">self-service query tools<\/a> to query MSDW data.<\/p>\n<p>&nbsp;<\/p>\n<h2>Request Access to Your Specific Data Mart<\/h2>\n<p>The MSDW Analyst Team delivered your data to you that included your direct specifications. If you wish to access and interact with the data set directly, it is possible to access the data set on the server.<\/p>\n<p><strong>Step 1: Sign the Direct Database Access Agreement<\/strong><\/p>\n<p>Download, read, and sign the <a href=\"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-content\/uploads\/sites\/350\/2021\/10\/MSDW2-Database-Access-Agreement.pdf\">MSDW Database Access Agreement<\/a>.<\/p>\n<p>User must have valid Mount Sinai credentials (Hospital or School) to complete and submit.<\/p>\n<p><strong>Step 2: Request access to your custom OMOP data mart or MSDW&#8217;s de-identified OMOP Database<\/strong><\/p>\n<p>Navigate to the <a href=\"https:\/\/scicomp.mssm.edu\/jira\/servicedesk\/customer\/portal\/4\">MSDW Service Desk<\/a> and submit a ticket for &#8220;MSDW Data Request.&#8221; Ticket must include an attached signed <a href=\"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-content\/uploads\/sites\/350\/2021\/10\/MSDW2-Database-Access-Agreement.pdf\">MSDW Database Access Agreement<\/a>. If possible, include details of your custom OMOP Data Mart(s).<\/p>\n<ul>\n<li>Attached the Direct Database Agreement to the ticket<\/li>\n<li>Please list the data mart(s) to which you are requesting access<\/li>\n<\/ul>\n<p><strong>Step 3: Confirmation<\/strong><\/p>\n<p>Once approved, you will receive an email from the MSDW Team confirming your access and providing the server IP address for MSDW access. Congratulations!<\/p>\n<p><strong>Step 4: Validate your connectivity to the database<\/strong><\/p>\n<ul type=\"disc\">\n<li>Using Linux (including your Minerva account) or MacOS?\u00a0 We can help you set up the DBeaver query tool (<a title=\"https:\/\/dbeaver.io\/download\/\" href=\"https:\/\/dbeaver.io\/download\/\" target=\"_blank\" rel=\"noopener noreferrer\" aria-label=\"Link https:\/\/dbeaver.io\/download\/\">https:\/\/dbeaver.io\/download\/<\/a>)<\/li>\n<li>Using Windows?\u00a0 We recommended Microsoft SSMS (<a title=\"https:\/\/docs.microsoft.com\/en-us\/sql\/ssms\/download-sql-server-management-studio-ssms?view=sql-server-ver15\" href=\"https:\/\/docs.microsoft.com\/en-us\/sql\/ssms\/download-sql-server-management-studio-ssms?view=sql-server-ver15\" target=\"_blank\" rel=\"noopener noreferrer\" aria-label=\"Link https:\/\/docs.microsoft.com\/en-us\/sql\/ssms\/download-sql-server-management-studio-ssms?view=sql-server-ver15\">https:\/\/docs.microsoft.com\/en-us\/sql\/ssms\/download-sql-server-management-studio-ssms?view=sql-server-ver15<\/a>)<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<h2>Renewing Access<\/h2>\n<p>Approved users have access to MSDW directly until the expiration of their IRB. Prior to IRB expiration, users may renew access by submitting renewed documentation:<\/p>\n<ol>\n<li>Submit an <a href=\"https:\/\/scicomp.atlassian.net\/servicedesk\/customer\/portal\/2\">MSDW Service Desk Ticket<\/a> for &#8220;Database Access&#8221;<\/li>\n<li>Attach renewed, valid IRB naming the requestor and expressly stating blanket approval to access all PHI Data<\/li>\n<li>Attach new\u00a0signed <a href=\"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-content\/uploads\/sites\/350\/2021\/10\/MSDW2-Database-Access-Agreement.pdf\">MSDW Database Access Agreement<\/a><\/li>\n<\/ol>\n<p>Once the request is approved, a member of the MSDW team will contact you to confirm your renewed access.<\/p>\n<p>[\/et_pb_text][\/et_pb_column_inner][\/et_pb_row_inner][\/et_pb_column][et_pb_column type=&#8221;1_3&#8243; _builder_version=&#8221;3.25&#8243; custom_padding=&#8221;|||&#8221; custom_padding__hover=&#8221;|||&#8221;][et_pb_image src=&#8221;https:\/\/labs.icahn.mssm.edu\/msdw\/wp-content\/uploads\/sites\/350\/2021\/10\/circuit-graphic-1024&#215;1024.png&#8221; title_text=&#8221;circuit graphic&#8221; _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221;][\/et_pb_image][et_pb_blurb admin_label=&#8221;Downloads blurb&#8221; _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221; header_text_color=&#8221;#00aeef&#8221; background_color=&#8221;RGBA(0,0,0,0)&#8221; text_orientation=&#8221;center&#8221; custom_margin=&#8221;10px|10px|10px|10px|false|false&#8221; custom_padding=&#8221;30px|30px|30px|30px|false|false&#8221; border_width_all=&#8221;2px&#8221; border_color_all=&#8221;#e0e0e0&#8243;]<\/p>\n<h1>Downloads<\/h1>\n<p><a href=\"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-content\/uploads\/sites\/350\/2021\/10\/MSDW2-Database-Access-Agreement.pdf\"><span style=\"color: #d80b8c\">MSDW Database Access Agreement<\/span><\/a><\/p>\n<p>[\/et_pb_blurb][\/et_pb_column][\/et_pb_section]<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Scientific Computing and Data\u00a0\/\u00a0Mount Sinai Data Warehouse \/ Direct Access to MSDW2Mount Sinai Data Warehouse Direct Access For those researchers who meet the criteria in the MSDW Direct Database Access Agreement, the MSDW team can provision your direct access to your OMOP data mart in Microsoft SQL Server. Don&#8217;t have an OMOP Data Mart? Consider [&hellip;]<\/p>\n","protected":false},"author":600,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_et_pb_use_builder":"on","_et_pb_old_content":"","_et_gb_content_width":"","footnotes":""},"class_list":["post-1234","page","type-page","status-publish","hentry"],"aioseo_notices":[],"_links":{"self":[{"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/pages\/1234","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/users\/600"}],"replies":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/comments?post=1234"}],"version-history":[{"count":23,"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/pages\/1234\/revisions"}],"predecessor-version":[{"id":3714,"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/pages\/1234\/revisions\/3714"}],"wp:attachment":[{"href":"https:\/\/labs.icahn.mssm.edu\/msdw\/wp-json\/wp\/v2\/media?parent=1234"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}