{"id":6022,"date":"2022-09-13T16:52:17","date_gmt":"2022-09-13T20:52:17","guid":{"rendered":"https:\/\/labs.icahn.mssm.edu\/minervalab\/?p=6022"},"modified":"2022-09-13T16:52:17","modified_gmt":"2022-09-13T20:52:17","slug":"minerva-hpc-information-and-training-sessions","status":"publish","type":"post","link":"https:\/\/labs.icahn.mssm.edu\/minervalab\/minerva-hpc-information-and-training-sessions\/","title":{"rendered":"Minerva HPC Information and Training Sessions"},"content":{"rendered":"

The Minerva Supercomputer provides high-performance computing resources to the Mount Sinai community. We will be holding 3 information\/training\u00a0sessions for Minerva this fall.\u00a0These sessions are intended to familiarize you with the\u00a0Minerva\u00a0environment.\u00a0Basic understanding of the general Unix operating environment and Linux commands is expected<\/strong>. Both sessions will be offered at\u00a0Icahn\u00a0Room\u00a0L3-36 with Zoom link available for remote attendants as well.<\/strong> Zoom links are provided following registration.<\/p>\n

 <\/p>\n

Session 1: Introduction to\u00a0Minerva \u2013\u00a0Wednesday, 21 September 2022, 11:00AM-12:00PM <\/strong><\/p>\n

Click here to register for Introduction Session<\/a><\/p>\n

Location:\u00a0Icahn School of Medicine building\u00a0(1425 Madison Ave) Room\u00a0L3-36<\/p>\n

Remote attendance: Zoom link provided following registration<\/p>\n

This session will cover:<\/p>\n

–\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 Minerva\u00a0resources<\/p>\n

–\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 Account and logging in<\/p>\n

–\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 User software environment<\/p>\n

–\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 Service on file transfers, web server, TSM\u00a0archive and\u00a0Rstudio connect server<\/p>\n

 <\/p>\n

Session 2:\u00a0Load Sharing Facility (LSF) Job Scheduler \u2013 Friday, 30 September 2022, 11:00AM-12:00PM\u00a0<\/strong><\/p>\n

Click here to register for LSF Job Scheduler Session<\/a><\/p>\n

Location:\u00a0Icahn School of Medicine building\u00a0(1425 Madison Ave) Room\u00a0L3-36<\/p>\n

Remote attendance: Zoom link provided following registration<\/p>\n

This session will cover:<\/p>\n

–\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 LSF introduction and basic\/helpful LSF commands<\/p>\n

–\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 Dependent job<\/p>\n

–\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 Self-scheduler<\/p>\n

–\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 Parallel jobs (job arrays, parallel processing and GPUs)<\/p>\n

–\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 Job restart with checkpoint<\/p>\n

–\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 Things to avoid<\/p>\n

 <\/p>\n

Session 3:\u00a0Containerized Environment on Minerva \u2013 Friday, 7 October 2022, 11:00AM-12:00PM\u00a0<\/strong><\/p>\n

Click here to register for Containerized Environment Session<\/a><\/p>\n

Location:\u00a0Icahn School of Medicine building\u00a0(1425 Madison Ave) Room\u00a0L3-36<\/p>\n

Remote attendance: Zoom link provided following registration<\/p>\n

This session will cover:<\/p>\n

–\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 Introduction to singularity container on Minerva with live demo<\/p>\n

–\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 How to use containerized Rstudio and manage R packages within the container<\/p>\n

 <\/p>\n

Please register ahead of time for sessions. Direct any questions to hpchelp@hpc.mssm.edu<\/a><\/p>\n

 <\/p>\n

Thank you, and we look forward to seeing you!<\/p>\n","protected":false},"excerpt":{"rendered":"

The Minerva Supercomputer provides high-performance computing resources to the Mount Sinai community. We will be holding 3 information\/training\u00a0sessions for Minerva this fall.\u00a0These sessions are intended to familiarize you with the\u00a0Minerva\u00a0environment.\u00a0Basic understanding of the general Unix operating environment and Linux commands is expected. Both sessions will be offered at\u00a0Icahn\u00a0Room\u00a0L3-36 with Zoom link available for remote attendants […]<\/p>\n","protected":false},"author":600,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_et_pb_use_builder":"","_et_pb_old_content":"","_et_gb_content_width":"","footnotes":""},"categories":[7],"tags":[],"class_list":["post-6022","post","type-post","status-publish","format-standard","hentry","category-minerva"],"aioseo_notices":[],"_links":{"self":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/posts\/6022","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/users\/600"}],"replies":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/comments?post=6022"}],"version-history":[{"count":2,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/posts\/6022\/revisions"}],"predecessor-version":[{"id":6024,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/posts\/6022\/revisions\/6024"}],"wp:attachment":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/media?parent=6022"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/categories?post=6022"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/tags?post=6022"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}