{"id":5761,"date":"2022-08-29T23:12:23","date_gmt":"2022-08-30T03:12:23","guid":{"rendered":"https:\/\/labs.icahn.mssm.edu\/minervalab\/?page_id=5761"},"modified":"2024-01-10T17:42:07","modified_gmt":"2024-01-10T22:42:07","slug":"blast","status":"publish","type":"page","link":"https:\/\/labs.icahn.mssm.edu\/minervalab\/resources\/data-ark\/blast\/","title":{"rendered":"BLAST"},"content":{"rendered":"

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Scientific Computing and Data<\/a> \/ Research Data Services<\/a> \/\u00a0Data Ark: Data Commons<\/a> \/ BLAST<\/p>\n

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BLAST\u00a0<\/span><\/strong><\/h1>\n

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Overview<\/h2>\n

Data Ark is hosting the NCBI BLAST database at the users’ request. This is a frequently updated database and the Data Ark team will manage and update the database regularly.<\/p>\n

The nr database is downloaded by using the update_blastdb.pl<\/em> script from the BLAST software, which is a preformatted version. For more information, click here<\/a>.<\/p>\n

The UniProt Reference Clusters (Uniref) have been formatted in a similar way, Data Ark hosts UniRef50, UniRef90, and UniRef100. For more information, click here<\/a>.<\/p>\n

Also hosted on the Data Ark is the Uniclust database; for more information, click here<\/a>.<\/p>\n

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Access<\/h2>\n

Effective from January 22, 2024, you must read, agree and sign the Data Use Agreement <\/a>(you must be logged in through the Mount Sinai campus network or secure remote VPN). Access is granted within 24 hours, and on Minerva, you can load module $ module load dataark <\/strong>to see the path variables.<\/p>\n

Data Ark Data Sets<\/h2>\n

Please visit the Data Ark Data Set<\/a> webpage to explore other data sets.<\/p>\n

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Scientific Computing and Data \/ Research Data Services \/\u00a0Data Ark: Data Commons \/ BLASTBLAST\u00a0Overview Data Ark is hosting the NCBI BLAST database at the users’ request. This is a frequently updated database and the Data Ark team will manage and update the database regularly. The nr database is downloaded by using the update_blastdb.pl script from […]<\/p>\n","protected":false},"author":415,"featured_media":0,"parent":1321,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_et_pb_use_builder":"on","_et_pb_old_content":"","_et_gb_content_width":"","footnotes":""},"class_list":["post-5761","page","type-page","status-publish","hentry"],"aioseo_notices":[],"_links":{"self":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages\/5761","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/users\/415"}],"replies":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/comments?post=5761"}],"version-history":[{"count":17,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages\/5761\/revisions"}],"predecessor-version":[{"id":7861,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages\/5761\/revisions\/7861"}],"up":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages\/1321"}],"wp:attachment":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/media?parent=5761"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}