{"id":5190,"date":"2022-06-09T10:40:23","date_gmt":"2022-06-09T14:40:23","guid":{"rendered":"https:\/\/labs.icahn.mssm.edu\/minervalab\/?page_id=5190"},"modified":"2026-10-29T06:28:12","modified_gmt":"2026-10-29T10:28:12","slug":"eqtlgen","status":"publish","type":"page","link":"https:\/\/labs.icahn.mssm.edu\/minervalab\/resources\/data-ark\/eqtlgen\/","title":{"rendered":"eQTLGen"},"content":{"rendered":"<p>[et_pb_section bb_built=&#8221;1&#8243; fullwidth=&#8221;on&#8221; _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221; next_background_color=&#8221;#000000&#8243;][et_pb_fullwidth_menu menu_id=&#8221;14&#8243; menu_style=&#8221;centered&#8221; fullwidth_menu=&#8221;on&#8221; active_link_color=&#8221;#d80b8c&#8221; dropdown_menu_bg_color=&#8221;#221f72&#8243; dropdown_menu_line_color=&#8221;#221f72&#8243; dropdown_menu_active_link_color=&#8221;#d80b8c&#8221; _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221; menu_font=&#8221;|600|||||||&#8221; 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}||  .airms-new-doc .doc-section summary { font-size: 21px; }||  .airms-new-doc .eyebrow,||  .airms-new-doc .intro-eyebrow { font-size: 21px; }||}||&#8221; vertical_offset_tablet=&#8221;0&#8243; horizontal_offset_tablet=&#8221;0&#8243; z_index_tablet=&#8221;0&#8243;]<\/p>\n<div class=\"airms-new-doc\">\n<h2>Access<\/h2>\n<p>Effective from January 22, 2024, you must read, agree and sign the <a href=\"https:\/\/dataarkforms.hpc.mssm.edu\/\">Data Use Agreement <\/a>(you must be logged in through the Mount Sinai campus network or secure remote VPN). Access is granted within 24 hours, and on Minerva, you can load module <strong>$ module load dataark <\/strong>to see the path variables.<\/p>\n<h2>More Information<\/h2>\n<p>The Genome files are downloaded from <a href=\"https:\/\/www.eqtlgen.org\/\">this website<\/a>, and the different data folders on the Data Ark are the <a href=\"https:\/\/www.eqtlgen.org\/cis-eqtls.html\">cis-eQTLs<\/a>, <a href=\"https:\/\/www.eqtlgen.org\/trans-eqtls.html\">trans-eQTLs<\/a>, <a href=\"https:\/\/www.eqtlgen.org\/eqts.html\">eQTS<\/a>, <a href=\"https:\/\/www.eqtlgen.org\/sc\/index.html\">sc-eQTLGen<\/a>, and <a href=\"https:\/\/www.eqtlgen.org\/replications.html\">Replications<\/a>.<\/p>\n<h2>Data Ark Data Sets<\/h2>\n<p>Please visit the <a href=\"https:\/\/labs.icahn.mssm.edu\/minervalab\/resources\/data-ark\/data-ark-data-sets\/\">Data Ark Data Set<\/a> webpage to explore other data sets.<\/p>\n<\/div>\n<p>[\/et_pb_text][\/et_pb_column][\/et_pb_row][\/et_pb_section]<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Scientific Computing and Data Data Ark: Data Commons eQTLGen Data Ark Documentation eQTLGen Consortium Overview The eQTLGen Consortium has been set up to identify the downstream consequences of trait-related genetic variants. Access Effective from January 22, 2024, you must read, agree and sign the Data Use Agreement (you must be logged in through the Mount [&hellip;]<\/p>\n","protected":false},"author":415,"featured_media":0,"parent":1321,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_et_pb_use_builder":"on","_et_pb_old_content":"","_et_gb_content_width":"","footnotes":""},"class_list":["post-5190","page","type-page","status-publish","hentry"],"aioseo_notices":[],"_links":{"self":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages\/5190","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/users\/415"}],"replies":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/comments?post=5190"}],"version-history":[{"count":29,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages\/5190\/revisions"}],"predecessor-version":[{"id":15659,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages\/5190\/revisions\/15659"}],"up":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages\/1321"}],"wp:attachment":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/media?parent=5190"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}