{"id":5190,"date":"2022-06-09T10:40:23","date_gmt":"2022-06-09T14:40:23","guid":{"rendered":"https:\/\/labs.icahn.mssm.edu\/minervalab\/?page_id=5190"},"modified":"2024-01-10T17:42:49","modified_gmt":"2024-01-10T22:42:49","slug":"eqtlgen","status":"publish","type":"page","link":"https:\/\/labs.icahn.mssm.edu\/minervalab\/resources\/data-ark\/eqtlgen\/","title":{"rendered":"eQTLGen"},"content":{"rendered":"

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Scientific Computing and Data<\/a> \/ Research Data Services<\/a> \/\u00a0Data Ark: Data Commons<\/a> \/ eTQLGen<\/p>\n

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eQTLGen Consortium <\/span><\/strong><\/h1>\n

[\/et_pb_text][\/et_pb_column][\/et_pb_row][et_pb_row column_structure=”1_5,3_5,1_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][\/et_pb_column][et_pb_column type=”3_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_image src=”https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-content\/uploads\/sites\/342\/2022\/06\/Screen-Shot-2022-06-09-at-12.12.15-AM.png” title_text=”Screen Shot 2022-06-09 at 12.12.15 AM” admin_label=”Human genome project picture” _builder_version=”4.9.0″ _module_preset=”default” custom_margin=”-37px|||||”][\/et_pb_image][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][\/et_pb_column][\/et_pb_row][et_pb_row _builder_version=”4.9.0″ _module_preset=”default” custom_margin=”|auto|35px|auto||” custom_padding=”28px|||||”][et_pb_column type=”4_4″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text admin_label=”Text” _builder_version=”4.9.0″ _module_preset=”default” text_line_height=”1.5em”]<\/p>\n

Overview<\/h2>\n

The eQTLGen Consortium has been set up to identify the downstream consequences of trait-related genetic variants.[\/et_pb_text][\/et_pb_column][\/et_pb_row][et_pb_row column_structure=”1_5,3_5,1_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][\/et_pb_column][et_pb_column type=”3_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_image src=”https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-content\/uploads\/sites\/342\/2022\/06\/Screen-Shot-2022-06-14-at-4.07.07-PM.png” title_text=”Screen Shot 2022-06-14 at 4.07.07 PM” _builder_version=”4.9.0″ _module_preset=”default”][\/et_pb_image][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][\/et_pb_column][\/et_pb_row][et_pb_row _builder_version=”4.9.0″ _module_preset=”default”][et_pb_column type=”4_4″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text admin_label=”Text” _builder_version=”4.9.0″ _module_preset=”default” text_line_height=”1.5em” hover_enabled=”0″ sticky_enabled=”0″]<\/p>\n

Access<\/h2>\n

Effective from January 22, 2024, you must read, agree and sign the Data Use Agreement <\/a>(you must be logged in through the Mount Sinai campus network or secure remote VPN). Access is granted within 24 hours, and on Minerva, you can load module $ module load dataark <\/strong>to see the path variables.<\/p>\n

More Information<\/h2>\n

The Genome files are downloaded from this website<\/a>, and the different data folders on the Data Ark are the cis-eQTLs<\/a>, trans-eQTLs<\/a>, eQTS<\/a>, sc-eQTLGen<\/a>, and Replications<\/a>.<\/p>\n

Data Ark Data Sets<\/h2>\n

Please visit the Data Ark Data Set<\/a> webpage to explore other data sets.<\/p>\n

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Scientific Computing and Data \/ Research Data Services \/\u00a0Data Ark: Data Commons \/ eTQLGen eQTLGen Consortium Overview The eQTLGen Consortium has been set up to identify the downstream consequences of trait-related genetic variants.Access Effective from January 22, 2024, you must read, agree and sign the Data Use Agreement (you must be logged in through the […]<\/p>\n","protected":false},"author":415,"featured_media":0,"parent":1321,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_et_pb_use_builder":"on","_et_pb_old_content":"","_et_gb_content_width":"","footnotes":""},"class_list":["post-5190","page","type-page","status-publish","hentry"],"aioseo_notices":[],"_links":{"self":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages\/5190","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/users\/415"}],"replies":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/comments?post=5190"}],"version-history":[{"count":24,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages\/5190\/revisions"}],"predecessor-version":[{"id":7862,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages\/5190\/revisions\/7862"}],"up":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages\/1321"}],"wp:attachment":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/media?parent=5190"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}