{"id":2708,"date":"2021-10-11T14:03:11","date_gmt":"2021-10-11T18:03:11","guid":{"rendered":"https:\/\/labs.icahn.mssm.edu\/minervalab\/?page_id=2708"},"modified":"2025-06-09T14:23:40","modified_gmt":"2025-06-09T18:23:40","slug":"services-resources","status":"publish","type":"page","link":"https:\/\/labs.icahn.mssm.edu\/minervalab\/scientific-computing-and-data\/services-resources\/","title":{"rendered":"Services and Resources"},"content":{"rendered":"<p>[et_pb_section fb_built=&#8221;1&#8243; _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221; background_image=&#8221;https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-content\/uploads\/sites\/342\/2022\/05\/block-bg-gradient-horizontal-221f72.png&#8221; animation_style=&#8221;zoom&#8221;][et_pb_row _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221;][et_pb_column type=&#8221;4_4&#8243; _builder_version=&#8221;4.9.0&#8243; _module_preset=&#8221;default&#8221;][et_pb_text admin_label=&#8221;Services and Resources text&#8221; _builder_version=&#8221;4.9.0&#8243; text_font=&#8221;||||||||&#8221; text_text_color=&#8221;#ffffff&#8221; text_font_size=&#8221;18px&#8221; text_line_height=&#8221;1.8em&#8221; header_font=&#8221;|700|||||||&#8221; header_text_align=&#8221;center&#8221; header_text_color=&#8221;#ffffff&#8221; header_font_size=&#8221;45px&#8221; header_line_height=&#8221;1.3em&#8221; header_2_font=&#8221;||||||||&#8221; background_enable_image=&#8221;off&#8221; text_orientation=&#8221;center&#8221; max_width=&#8221;700px&#8221; module_alignment=&#8221;center&#8221;]<\/p>\n<h1>Services and Resources<\/h1>\n<p>We partner with researchers to advance science by providing tools, resources, and assistance to researchers across institutions around the globe<\/p>\n<p>[\/et_pb_text][\/et_pb_column][\/et_pb_row][\/et_pb_section][et_pb_section fb_built=&#8221;1&#8243; admin_label=&#8221;Features CTA Section&#8221; _builder_version=&#8221;3.22&#8243; custom_padding=&#8221;100px|0px|100px|0px&#8221; saved_tabs=&#8221;all&#8221;][et_pb_row column_structure=&#8221;1_2,1_2&#8243; admin_label=&#8221;Right Sided Image&#8221; _builder_version=&#8221;3.25&#8243; custom_padding=&#8221;60px|0px|60px|0px&#8221;][et_pb_column type=&#8221;1_2&#8243; _builder_version=&#8221;3.25&#8243; custom_padding=&#8221;|||&#8221; custom_padding__hover=&#8221;|||&#8221;][et_pb_text admin_label=&#8221;Access Data&#8221; _builder_version=&#8221;4.9.0&#8243; text_font=&#8221;||||||||&#8221; text_text_color=&#8221;#959baf&#8221; text_font_size=&#8221;18px&#8221; text_line_height=&#8221;1.8em&#8221; header_font=&#8221;||||||||&#8221; header_text_align=&#8221;left&#8221; header_2_font=&#8221;|700|||||||&#8221; header_2_text_color=&#8221;#221f72&#8243; header_2_font_size=&#8221;34px&#8221; header_2_line_height=&#8221;1.3em&#8221; max_width=&#8221;700px&#8221; module_alignment=&#8221;center&#8221; hover_enabled=&#8221;0&#8243; sticky_enabled=&#8221;0&#8243;]<\/p>\n<h2>Access Data<\/h2>\n<p>For de-identified data:<\/p>\n<ul>\n<li>Conduct your own queries with the Mount Sinai Data Warehouse <a href=\"https:\/\/msdw.mountsinai.org\/\">(MSDW) self-service cohort selection tools<\/a><\/li>\n<li><a href=\"https:\/\/scicomp.atlassian.net\/servicedesk\/customer\/portal\/2\">Request a specific, custom data set<\/a>\u00a0from an MSDW analyst<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<p>For identified patient data:<\/p>\n<ul>\n<li><a href=\"https:\/\/scicomp.atlassian.net\/servicedesk\/customer\/portal\/3\">Request access to a specific data mart<\/a>\u00a0accessible through Atlas<\/li>\n<li><a href=\"https:\/\/dataarkforms.hpc.mssm.edu\/\">Request access to a specific data mart<\/a>\u00a0housed within the Data Ark<\/li>\n<li><a href=\"https:\/\/scicomp.atlassian.net\/servicedesk\/customer\/portal\/2\">Request a specific, custom data set<\/a>\u00a0from an MSDW analyst<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<p>For public or Mount Sinai-generated data,\u00a0<a href=\"https:\/\/labs.icahn.mssm.edu\/minervalab\/resources\/data-ark\/\">review custom data sets<\/a>\u00a0through the Data Ark.<\/p>\n<p>[\/et_pb_text][\/et_pb_column][et_pb_column type=&#8221;1_2&#8243; 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_builder_version=&#8221;4.9.0&#8243; animation_style=&#8221;zoom&#8221; animation_direction=&#8221;right&#8221; animation_intensity_zoom=&#8221;5%&#8221;][\/et_pb_image][\/et_pb_column][et_pb_column type=&#8221;1_2&#8243; _builder_version=&#8221;3.25&#8243; custom_padding=&#8221;|||&#8221; custom_padding__hover=&#8221;|||&#8221;][et_pb_text admin_label=&#8221;Access Research Tools&#8221; _builder_version=&#8221;4.9.0&#8243; text_font=&#8221;||||||||&#8221; text_text_color=&#8221;#959baf&#8221; text_font_size=&#8221;18px&#8221; text_line_height=&#8221;1.8em&#8221; header_font=&#8221;||||||||&#8221; header_text_align=&#8221;left&#8221; header_2_font=&#8221;|700|||||||&#8221; header_2_text_color=&#8221;#221f72&#8243; header_2_font_size=&#8221;34px&#8221; header_2_line_height=&#8221;1.3em&#8221; max_width=&#8221;700px&#8221; module_alignment=&#8221;center&#8221; hover_enabled=&#8221;0&#8243; sticky_enabled=&#8221;0&#8243;]<\/p>\n<h2>Access Research Tools<\/h2>\n<ul>\n<li>Conduct surveys, schedule instruments, capture data, and export data\u00a0<a href=\"https:\/\/labs.icahn.mssm.edu\/minervalab\/rds\/about-redcap\/\">through REDCap<\/a><\/li>\n<li>Set up and operate a custom-made database to organize, capture, and process your own data\u00a0<a href=\"https:\/\/labs.icahn.mssm.edu\/minervalab\/rds\/about-erap\/\">through eRAP<\/a><\/li>\n<li>Conduct your own queries with\u00a0<a href=\"https:\/\/labs.icahn.mssm.edu\/msdw\/services\/\">MSDW\u2019s self-service cohort selection tools<\/a><\/li>\n<\/ul>\n<p>[\/et_pb_text][\/et_pb_column][\/et_pb_row][et_pb_row column_structure=&#8221;1_2,1_2&#8243; admin_label=&#8221;Right Sided Image&#8221; _builder_version=&#8221;3.25&#8243; custom_padding=&#8221;60px|0px|60px|0px&#8221;][et_pb_column type=&#8221;1_2&#8243; _builder_version=&#8221;3.25&#8243; custom_padding=&#8221;|||&#8221; custom_padding__hover=&#8221;|||&#8221;][et_pb_text admin_label=&#8221;Computing Resources&#8221; _builder_version=&#8221;4.9.0&#8243; text_font=&#8221;||||||||&#8221; text_text_color=&#8221;#959baf&#8221; text_font_size=&#8221;18px&#8221; text_line_height=&#8221;1.8em&#8221; header_font=&#8221;||||||||&#8221; header_text_align=&#8221;left&#8221; header_2_font=&#8221;|700|||||||&#8221; header_2_text_color=&#8221;#221f72&#8243; header_2_font_size=&#8221;34px&#8221; header_2_line_height=&#8221;1.3em&#8221; max_width=&#8221;700px&#8221; module_alignment=&#8221;center&#8221; hover_enabled=&#8221;0&#8243; sticky_enabled=&#8221;0&#8243;]<\/p>\n<h2>Access Computing Resources<\/h2>\n<ul>\n<li>Process large compute jobs through\u00a0<a href=\"https:\/\/labs.icahn.mssm.edu\/minervalab\/minerva-quick-start\/\">supercomputer Minerva<\/a><\/li>\n<li><a href=\"https:\/\/labs.icahn.mssm.edu\/minervalab\/request-an-account\/\">Request an external collaborator account or a project allocation<\/a>\u00a0to share workflows on Minerva<\/li>\n<\/ul>\n<p>[\/et_pb_text][\/et_pb_column][et_pb_column type=&#8221;1_2&#8243; 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text_font_size=&#8221;18px&#8221; text_line_height=&#8221;1.8em&#8221; header_font=&#8221;||||||||&#8221; header_2_font=&#8221;|700|||||||&#8221; header_2_text_color=&#8221;#221f72&#8243; header_2_font_size=&#8221;35px&#8221; header_2_line_height=&#8221;1.3em&#8221; text_orientation=&#8221;center&#8221; background_layout=&#8221;dark&#8221; max_width=&#8221;700px&#8221; module_alignment=&#8221;center&#8221; text_line_height_tablet=&#8221;1.7em&#8221; text_line_height_last_edited=&#8221;off|desktop&#8221;]<\/p>\n<h2>Scientific Computing and Data Publications<\/h2>\n<p>Our team has published&#8211;and assisted others to publish&#8211;substantial work:<\/p>\n<ul>\n<li style=\"text-align: left\">See\u00a0<a href=\"https:\/\/labs.icahn.mssm.edu\/minervalab\/publications\/scientific-computing-publications\/\">publications by Dean for Scientific Computing and Data Patricia Kovatch<\/a><\/li>\n<li style=\"text-align: left\">See<a href=\"https:\/\/labs.icahn.mssm.edu\/minervalab\/publications\/published-papers\/\">\u00a0papers published through Minerva<\/a><\/li>\n<li style=\"text-align: left\">See\u00a0<a href=\"https:\/\/labs.icahn.mssm.edu\/minervalab\/policies\/acknowledge-scientific-computing-at-mount-sinai\/\">acknowledgements to add to publications that utilize our resources<\/a><\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<p>We are supported by grant UL1TR004419 from the National Center for Advancing Translational Sciences, National Institutes of Health.<\/p>\n<p>[\/et_pb_text][\/et_pb_column][\/et_pb_row][\/et_pb_section][et_pb_section fb_built=&#8221;1&#8243; 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