[\/et_pb_text][\/et_pb_column][\/et_pb_row][\/et_pb_section][et_pb_section fb_built=”1″ admin_label=”section” _builder_version=”4.9.0″ custom_padding=”0px||||false|false”][et_pb_row _builder_version=”4.9.0″ _module_preset=”default” custom_padding=”||27px|||”][et_pb_column type=”4_4″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text admin_label=”Header” _builder_version=”4.9.0″ _module_preset=”default” header_font_size=”36px”]<\/p>\n
GTex<\/span><\/strong><\/h1>\n[\/et_pb_text][et_pb_image src=”https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-content\/uploads\/sites\/342\/2021\/01\/da7.png” title_text=”da7″ _builder_version=”4.9.0″ _module_preset=”default”][\/et_pb_image][et_pb_text admin_label=”Body text” _builder_version=”4.9.0″ _module_preset=”default” text_line_height=”1.5em”]<\/p>\n
Overview<\/h2>\n
The Genotype-Tissue Expression (GTEx) project, initiated in 2010, has built a comprehensive public resource to study tissue-specific gene expression and regulation. The latest GTEx V8 data set represents the largest atlas of human gene expression and genotype data so far, containing whole genome sequencing (WGS) data (~32x depth) on 838 postmortem donors and 17,382 RNA-seq samples across 54 tissue sites and 2 cell lines.[\/et_pb_text][et_pb_image src=”https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-content\/uploads\/sites\/342\/2021\/01\/da8.png” title_text=”da8″ _builder_version=”4.9.0″ _module_preset=”default” min_height=”269px” custom_margin=”||||false|false”][\/et_pb_image][et_pb_text admin_label=”Access Text” _builder_version=”4.9.0″ _module_preset=”default” text_line_height=”1.5em” hover_enabled=”0″ sticky_enabled=”0″]<\/p>\n
The GTEx portal (here<\/a>) now includes a histological image viewer, a functional annotation browser and H3K27ac ChIP-seq data. Researchers can also apply to access the biospecimens that were biobanked as part of the project for further investigation here<\/a>.<\/p>\nAccess<\/h2>\n
Effective from January 22, 2024, you must read, agree and sign the Data Use Agreement <\/a>(you must be logged in through the Mount Sinai campus network or secure remote VPN). Access is granted within 24 hours, and on Minerva, you can load module $ module load dataark <\/strong>to see the path variables.<\/p>\nMore Information<\/h2>\n
The GTEx data (version 8) were uploaded to the Data Ark on 05\/15\/20. Included are a range of public data sets summarized on the GTEx portal here<\/a>.<\/p>\nData Ark Data Sets<\/h2>\n
Please visit the Data Ark Data Set<\/a> webpage to explore other data sets.<\/p>\n[\/et_pb_text][\/et_pb_column][\/et_pb_row][\/et_pb_section]<\/p>\n","protected":false},"excerpt":{"rendered":"
Scientific Computing and Data \/ Research Data Services \/\u00a0Data Ark: Data Commons \/ GTexGTexOverview The Genotype-Tissue Expression (GTEx) project, initiated in 2010, has built a comprehensive public resource to study tissue-specific gene expression and regulation. The latest GTEx V8 data set represents the largest atlas of human gene expression and genotype data so far, containing […]<\/p>\n","protected":false},"author":415,"featured_media":0,"parent":1321,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_et_pb_use_builder":"on","_et_pb_old_content":"\u00a0\r\n\r\n![\"\"](\"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-content\/uploads\/sites\/342\/2021\/01\/da7.png\")
\r\n\r\nThe Genotype-Tissue Expression (GTEx) project, initiated in 2010, has built a comprehensive public resource to study tissue-specific gene expression and regulation. The latest GTEx V8 data set represents the largest atlas of human gene expression and genotype data so far, containing whole genome sequencing (WGS) data (~32x depth) on 838 postmortem donors and 17,382 RNA-seq samples across 54 tissue sites and 2 cell lines.\r\n\r\n![\"\"](\"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-content\/uploads\/sites\/342\/2021\/01\/da8.png\")
\r\n\r\nThe GTEx portal (here<\/a>) now includes a histological image viewer, a functional annotation browser and H3K27ac ChIP-seq data. Researchers can also apply to access the biospecimens that were biobanked as part of the project for further investigation here<\/a>.\r\n\r\nThe GTEx data (version 8) were uploaded to the Data Ark on 05\/15\/20. Included are a range of public data sets summarised on the GTEx portal here<\/a>.\r\n\r\nTo use this data, you must read, agree and sign the Data Use Agreement here<\/strong><\/em><\/a>.","_et_gb_content_width":"","footnotes":""},"class_list":["post-1327","page","type-page","status-publish","hentry"],"aioseo_notices":[],"_links":{"self":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages\/1327","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/users\/415"}],"replies":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/comments?post=1327"}],"version-history":[{"count":45,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages\/1327\/revisions"}],"predecessor-version":[{"id":7866,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages\/1327\/revisions\/7866"}],"up":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages\/1321"}],"wp:attachment":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/media?parent=1327"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}
Access<\/h2>\n
Effective from January 22, 2024, you must read, agree and sign the Data Use Agreement <\/a>(you must be logged in through the Mount Sinai campus network or secure remote VPN). Access is granted within 24 hours, and on Minerva, you can load module $ module load dataark <\/strong>to see the path variables.<\/p>\n The GTEx data (version 8) were uploaded to the Data Ark on 05\/15\/20. Included are a range of public data sets summarized on the GTEx portal here<\/a>.<\/p>\n Please visit the Data Ark Data Set<\/a> webpage to explore other data sets.<\/p>\n [\/et_pb_text][\/et_pb_column][\/et_pb_row][\/et_pb_section]<\/p>\n","protected":false},"excerpt":{"rendered":" Scientific Computing and Data \/ Research Data Services \/\u00a0Data Ark: Data Commons \/ GTexGTexOverview The Genotype-Tissue Expression (GTEx) project, initiated in 2010, has built a comprehensive public resource to study tissue-specific gene expression and regulation. The latest GTEx V8 data set represents the largest atlas of human gene expression and genotype data so far, containing […]<\/p>\n","protected":false},"author":415,"featured_media":0,"parent":1321,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_et_pb_use_builder":"on","_et_pb_old_content":"\u00a0\r\n\r\nMore Information<\/h2>\n
Data Ark Data Sets<\/h2>\n
\r\n\r\nThe Genotype-Tissue Expression (GTEx) project, initiated in 2010, has built a comprehensive public resource to study tissue-specific gene expression and regulation. The latest GTEx V8 data set represents the largest atlas of human gene expression and genotype data so far, containing whole genome sequencing (WGS) data (~32x depth) on 838 postmortem donors and 17,382 RNA-seq samples across 54 tissue sites and 2 cell lines.\r\n\r\n\r\n\r\nThe GTEx portal (here<\/a>) now includes a histological image viewer, a functional annotation browser and H3K27ac ChIP-seq data. Researchers can also apply to access the biospecimens that were biobanked as part of the project for further investigation here<\/a>.\r\n\r\nThe GTEx data (version 8) were uploaded to the Data Ark on 05\/15\/20. Included are a range of public data sets summarised on the GTEx portal here<\/a>.\r\n\r\nTo use this data, you must read, agree and sign the Data Use Agreement here<\/strong><\/em><\/a>.","_et_gb_content_width":"","footnotes":""},"class_list":["post-1327","page","type-page","status-publish","hentry"],"aioseo_notices":[],"_links":{"self":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages\/1327","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/users\/415"}],"replies":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/comments?post=1327"}],"version-history":[{"count":45,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages\/1327\/revisions"}],"predecessor-version":[{"id":7866,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages\/1327\/revisions\/7866"}],"up":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages\/1321"}],"wp:attachment":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/media?parent=1327"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}