{"id":1327,"date":"2020-07-07T09:58:58","date_gmt":"2020-07-07T13:58:58","guid":{"rendered":"https:\/\/labs.icahn.mssm.edu\/minervalab\/?page_id=1327"},"modified":"2026-10-29T14:15:37","modified_gmt":"2026-10-29T18:15:37","slug":"gtex","status":"publish","type":"page","link":"https:\/\/labs.icahn.mssm.edu\/minervalab\/resources\/data-ark\/gtex\/","title":{"rendered":"GTEx"},"content":{"rendered":"

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Scientific Computing and Data<\/a> \/ Research Data Services<\/a> \/\u00a0Data Ark: Data Commons<\/a> \/ GTex<\/p>\n

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GTex<\/span><\/strong><\/h1>\n

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Overview<\/h2>\n

The Genotype-Tissue Expression (GTEx) project, initiated in 2010, has built a comprehensive public resource to study tissue-specific gene expression and regulation. The latest GTEx V8 data set represents the largest atlas of human gene expression and genotype data so far, containing whole genome sequencing (WGS) data (~32x depth) on 838 postmortem donors and 17,382 RNA-seq samples across 54 tissue sites and 2 cell lines.<\/p>\n

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The GTEx portal (here<\/a>) now includes a histological image viewer, a functional annotation browser and H3K27ac ChIP-seq data. Researchers can also apply to access the biospecimens that were biobanked as part of the project for further investigation here<\/a>.<\/p>\n

Access<\/h2>\n

Effective from January 22, 2024, you must read, agree and sign the Data Use Agreement <\/a>(you must be logged in through the Mount Sinai campus network or secure remote VPN). Access is granted within 24 hours, and on Minerva, you can load module $ module load dataark <\/strong>to see the path variables.<\/p>\n

More Information<\/h2>\n

The GTEx data (version 8) were uploaded to the Data Ark on 05\/15\/20. Included are a range of public data sets summarized on the GTEx portal here<\/a>.<\/p>\n

Data Ark Data Sets<\/h2>\n

Please visit the Data Ark Data Set<\/a> webpage to explore other data sets.<\/p>\n

[\/et_pb_text][\/et_pb_column][\/et_pb_row][\/et_pb_section]<\/p>\n","protected":false},"excerpt":{"rendered":"

Scientific Computing and Data \/ Research Data Services \/\u00a0Data Ark: Data Commons \/ GTex GTex OverviewThe Genotype-Tissue Expression (GTEx) project, initiated in 2010, has built a comprehensive public resource to study tissue-specific gene expression and regulation. The latest GTEx V8 data set represents the largest atlas of human gene expression and genotype data so far, […]<\/p>\n","protected":false},"author":415,"featured_media":0,"parent":1321,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_et_pb_use_builder":"on","_et_pb_old_content":"\u00a0\r\n\r\n\"\"\r\n\r\nThe Genotype-Tissue Expression (GTEx) project, initiated in 2010, has built a comprehensive public resource to study tissue-specific gene expression and regulation. The latest GTEx V8 data set represents the largest atlas of human gene expression and genotype data so far, containing whole genome sequencing (WGS) data (~32x depth) on 838 postmortem donors and 17,382 RNA-seq samples across 54 tissue sites and 2 cell lines.\r\n\r\n\"\"\r\n\r\nThe GTEx portal (here<\/a>) now includes a histological image viewer, a functional annotation browser and H3K27ac ChIP-seq data. Researchers can also apply to access the biospecimens that were biobanked as part of the project for further investigation here<\/a>.\r\n\r\nThe GTEx data (version 8) were uploaded to the Data Ark on 05\/15\/20. Included are a range of public data sets summarised on the GTEx portal here<\/a>.\r\n\r\nTo use this data, you must read, agree and sign the Data Use Agreement here<\/strong><\/em><\/a>.","_et_gb_content_width":"","footnotes":""},"class_list":["post-1327","page","type-page","status-publish","hentry"],"aioseo_notices":[],"_links":{"self":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages\/1327","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/users\/415"}],"replies":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/comments?post=1327"}],"version-history":[{"count":48,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages\/1327\/revisions"}],"predecessor-version":[{"id":15690,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages\/1327\/revisions\/15690"}],"up":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages\/1321"}],"wp:attachment":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/media?parent=1327"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}