{"id":11876,"date":"2025-08-29T11:05:55","date_gmt":"2025-08-29T15:05:55","guid":{"rendered":"https:\/\/labs.icahn.mssm.edu\/minervalab\/?page_id=11876"},"modified":"2026-03-09T13:52:06","modified_gmt":"2026-03-09T17:52:06","slug":"air%c2%b7ms-frequently-asked-questions-faq","status":"publish","type":"page","link":"https:\/\/labs.icahn.mssm.edu\/minervalab\/air%c2%b7ms-frequently-asked-questions-faq\/","title":{"rendered":"AIR\u00b7MS Frequently Asked Questions (FAQ)"},"content":{"rendered":"<p>[et_pb_section bb_built=&#8221;1&#8243; _builder_version=&#8221;4.16&#8243; global_colors_info=&#8221;{}&#8221;][et_pb_row _builder_version=&#8221;4.16&#8243; background_size=&#8221;initial&#8221; background_position=&#8221;top_left&#8221; background_repeat=&#8221;repeat&#8221; global_colors_info=&#8221;{}&#8221;][et_pb_column type=&#8221;4_4&#8243; _builder_version=&#8221;4.16&#8243; custom_padding=&#8221;|||&#8221; global_colors_info=&#8221;{}&#8221; custom_padding__hover=&#8221;|||&#8221;][et_pb_text admin_label=&#8221;Breadcrumb&#8221; _builder_version=&#8221;4.16&#8243; vertical_offset_tablet=&#8221;0&#8243; horizontal_offset_tablet=&#8221;0&#8243; z_index_tablet=&#8221;0&#8243; text_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; text_text_shadow_vertical_length_tablet=&#8221;0px&#8221; text_text_shadow_blur_strength_tablet=&#8221;1px&#8221; link_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; link_text_shadow_vertical_length_tablet=&#8221;0px&#8221; link_text_shadow_blur_strength_tablet=&#8221;1px&#8221; ul_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; ul_text_shadow_vertical_length_tablet=&#8221;0px&#8221; ul_text_shadow_blur_strength_tablet=&#8221;1px&#8221; ol_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; ol_text_shadow_vertical_length_tablet=&#8221;0px&#8221; ol_text_shadow_blur_strength_tablet=&#8221;1px&#8221; quote_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; quote_text_shadow_vertical_length_tablet=&#8221;0px&#8221; quote_text_shadow_blur_strength_tablet=&#8221;1px&#8221; 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header_6_text_shadow_blur_strength_tablet=&#8221;1px&#8221; box_shadow_horizontal_tablet=&#8221;0px&#8221; box_shadow_vertical_tablet=&#8221;0px&#8221; box_shadow_blur_tablet=&#8221;40px&#8221; box_shadow_spread_tablet=&#8221;0px&#8221; global_colors_info=&#8221;{}&#8221;]<\/p>\n<p><a href=\"https:\/\/labs.icahn.mssm.edu\/minervalab\/\">Scientific Computing and Data<\/a> \/ <a href=\"https:\/\/labs.icahn.mssm.edu\/minervalab\/air-ms-artificial-intelligence-ready-mount-sinai\/\">AIR<strong>\u00b7<\/strong>MS (AI Ready Mount Sinai)<\/a> \/ AIR\u00b7MS Frequently Asked Questions (FAQ)<\/p>\n<p>&nbsp;<\/p>\n<p>[\/et_pb_text][et_pb_text _builder_version=&#8221;4.27.4&#8243; vertical_offset_tablet=&#8221;0&#8243; horizontal_offset_tablet=&#8221;0&#8243; z_index_tablet=&#8221;0&#8243; text_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; text_text_shadow_vertical_length_tablet=&#8221;0px&#8221; text_text_shadow_blur_strength_tablet=&#8221;1px&#8221; link_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; link_text_shadow_vertical_length_tablet=&#8221;0px&#8221; link_text_shadow_blur_strength_tablet=&#8221;1px&#8221; ul_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; ul_text_shadow_vertical_length_tablet=&#8221;0px&#8221; ul_text_shadow_blur_strength_tablet=&#8221;1px&#8221; ol_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; ol_text_shadow_vertical_length_tablet=&#8221;0px&#8221; ol_text_shadow_blur_strength_tablet=&#8221;1px&#8221; quote_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; quote_text_shadow_vertical_length_tablet=&#8221;0px&#8221; quote_text_shadow_blur_strength_tablet=&#8221;1px&#8221; header_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; header_text_shadow_vertical_length_tablet=&#8221;0px&#8221; header_text_shadow_blur_strength_tablet=&#8221;1px&#8221; header_2_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; header_2_text_shadow_vertical_length_tablet=&#8221;0px&#8221; header_2_text_shadow_blur_strength_tablet=&#8221;1px&#8221; header_3_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; header_3_text_shadow_vertical_length_tablet=&#8221;0px&#8221; header_3_text_shadow_blur_strength_tablet=&#8221;1px&#8221; header_4_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; header_4_text_shadow_vertical_length_tablet=&#8221;0px&#8221; header_4_text_shadow_blur_strength_tablet=&#8221;1px&#8221; header_5_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; header_5_text_shadow_vertical_length_tablet=&#8221;0px&#8221; header_5_text_shadow_blur_strength_tablet=&#8221;1px&#8221; header_6_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; header_6_text_shadow_vertical_length_tablet=&#8221;0px&#8221; header_6_text_shadow_blur_strength_tablet=&#8221;1px&#8221; box_shadow_horizontal_tablet=&#8221;0px&#8221; box_shadow_vertical_tablet=&#8221;0px&#8221; box_shadow_blur_tablet=&#8221;40px&#8221; box_shadow_spread_tablet=&#8221;0px&#8221; global_colors_info=&#8221;{}&#8221; background_pattern_color=&#8221;rgba(0,0,0,0.2)&#8221; background_mask_color=&#8221;#ffffff&#8221; text_text_shadow_horizontal_length=&#8221;text_text_shadow_style,%91object Object%93&#8243; text_text_shadow_vertical_length=&#8221;text_text_shadow_style,%91object Object%93&#8243; text_text_shadow_blur_strength=&#8221;text_text_shadow_style,%91object Object%93&#8243; link_text_shadow_horizontal_length=&#8221;link_text_shadow_style,%91object Object%93&#8243; link_text_shadow_vertical_length=&#8221;link_text_shadow_style,%91object Object%93&#8243; link_text_shadow_blur_strength=&#8221;link_text_shadow_style,%91object Object%93&#8243; ul_text_shadow_horizontal_length=&#8221;ul_text_shadow_style,%91object Object%93&#8243; ul_text_shadow_vertical_length=&#8221;ul_text_shadow_style,%91object Object%93&#8243; ul_text_shadow_blur_strength=&#8221;ul_text_shadow_style,%91object Object%93&#8243; ol_text_shadow_horizontal_length=&#8221;ol_text_shadow_style,%91object Object%93&#8243; ol_text_shadow_vertical_length=&#8221;ol_text_shadow_style,%91object Object%93&#8243; ol_text_shadow_blur_strength=&#8221;ol_text_shadow_style,%91object Object%93&#8243; quote_text_shadow_horizontal_length=&#8221;quote_text_shadow_style,%91object Object%93&#8243; quote_text_shadow_vertical_length=&#8221;quote_text_shadow_style,%91object Object%93&#8243; quote_text_shadow_blur_strength=&#8221;quote_text_shadow_style,%91object Object%93&#8243; header_text_shadow_horizontal_length=&#8221;header_text_shadow_style,%91object Object%93&#8243; header_text_shadow_vertical_length=&#8221;header_text_shadow_style,%91object Object%93&#8243; header_text_shadow_blur_strength=&#8221;header_text_shadow_style,%91object Object%93&#8243; header_2_text_shadow_horizontal_length=&#8221;header_2_text_shadow_style,%91object Object%93&#8243; header_2_text_shadow_vertical_length=&#8221;header_2_text_shadow_style,%91object Object%93&#8243; header_2_text_shadow_blur_strength=&#8221;header_2_text_shadow_style,%91object Object%93&#8243; header_3_text_shadow_horizontal_length=&#8221;header_3_text_shadow_style,%91object Object%93&#8243; header_3_text_shadow_vertical_length=&#8221;header_3_text_shadow_style,%91object Object%93&#8243; header_3_text_shadow_blur_strength=&#8221;header_3_text_shadow_style,%91object Object%93&#8243; header_4_text_shadow_horizontal_length=&#8221;header_4_text_shadow_style,%91object Object%93&#8243; header_4_text_shadow_vertical_length=&#8221;header_4_text_shadow_style,%91object Object%93&#8243; header_4_text_shadow_blur_strength=&#8221;header_4_text_shadow_style,%91object Object%93&#8243; header_5_text_shadow_horizontal_length=&#8221;header_5_text_shadow_style,%91object Object%93&#8243; header_5_text_shadow_vertical_length=&#8221;header_5_text_shadow_style,%91object Object%93&#8243; header_5_text_shadow_blur_strength=&#8221;header_5_text_shadow_style,%91object Object%93&#8243; header_6_text_shadow_horizontal_length=&#8221;header_6_text_shadow_style,%91object Object%93&#8243; header_6_text_shadow_vertical_length=&#8221;header_6_text_shadow_style,%91object Object%93&#8243; header_6_text_shadow_blur_strength=&#8221;header_6_text_shadow_style,%91object Object%93&#8243;]<\/p>\n<h1><span style=\"color: #00aeef\"><strong>AIR\u00b7MS Frequently Asked Questions (FAQ)<\/strong><\/span><\/h1>\n<p><span style=\"color: #000000\"><strong>GENERAL<\/strong><\/span><\/p>\n<p><span style=\"color: #00aeef\"><a style=\"color: #00aeef\" href=\"#question1\"><strong><span class=\"TextRun SCXW100594254 BCX8\" lang=\"EN-US\" xml:lang=\"EN-US\" data-contrast=\"auto\"><span class=\"NormalTextRun SCXW100594254 BCX8\">Q: What do I need to<\/span><span class=\"NormalTextRun SCXW100594254 BCX8\">\u00a0have before<\/span>\u00a0<span class=\"NormalTextRun SCXW100594254 BCX8\">request<\/span><span class=\"NormalTextRun SCXW100594254 BCX8\">ing<\/span><span class=\"NormalTextRun SCXW100594254 BCX8\">\u00a0AIR\u00b7MS access<\/span><span class=\"NormalTextRun SCXW100594254 BCX8\">\u00a0(pre-requisites)<\/span><span class=\"NormalTextRun SCXW100594254 BCX8\">?<\/span><\/span><\/strong><\/a><\/span><\/p>\n<p><span style=\"color: #00aeef\"><a style=\"color: #00aeef\" href=\"#question2\"><strong><span class=\"TextRun SCXW244214501 BCX8\" lang=\"EN-US\" xml:lang=\"EN-US\" data-contrast=\"auto\"><span class=\"NormalTextRun SCXW244214501 BCX8\">Q: How do I request access to AIR\u00b7MS datasets?<\/span><\/span><\/strong><\/a><\/span><\/p>\n<p><span style=\"color: #00aeef\"><a style=\"color: #00aeef\" href=\"#question3\"><strong>Q: I submitted a SailPoint request\u2014how do I know if it\u2019s approved?<\/strong><\/a><\/span><\/p>\n<p><span style=\"color: #00aeef\"><a style=\"color: #00aeef\" href=\"#question4\"><strong>Q: How do I track the progress of my access request?<\/strong><\/a><\/span><\/p>\n<p><span style=\"color: #00aeef\"><a style=\"color: #00aeef\" href=\"#question5\"><strong>Q: My access was denied. What should I do?<\/strong><\/a><\/span><\/p>\n<p>\u00a0<\/p>\n<p><span style=\"color: #000000\"><strong>GETTING STARTED &amp; ENVIRONMENT SETUP <\/strong><\/span><\/p>\n<p><span style=\"color: #00aeef\"><a style=\"color: #00aeef\" href=\"#question6\"><strong>Q: What are my username and password?<\/strong><\/a><\/span><\/p>\n<p><span style=\"color: #00aeef\"><a style=\"color: #00aeef\" href=\"#question7\"><strong>Q: How do I connect to AIR\u00b7MS? <\/strong><\/a><\/span><\/p>\n<p><span style=\"color: #00aeef\"><a style=\"color: #00aeef\" href=\"#question8\"><strong>Q: I can\u2019t reach the SailPoint or GitHub tutorial pages.<\/strong><\/a><\/span><\/p>\n<p><span style=\"color: #00aeef\"><a style=\"color: #00aeef\" href=\"#question9\"><strong>Q: Can I connect to AIR\u00b7MS using a database client? <\/strong><\/a><\/span><\/p>\n<p>\u00a0<\/p>\n<p><strong>DATA<\/strong><\/p>\n<p><span style=\"color: #00aeef\"><a style=\"color: #00aeef\" href=\"#question10\"><strong>Q: How is data stored on AIR\u00b7MS?<\/strong><\/a><\/span><\/p>\n<p><span style=\"color: #00aeef\"><a style=\"color: #00aeef\" href=\"#question11\"><strong>Q: What data are available on AIR\u00b7MS?\u00a0<\/strong><\/a><\/span><\/p>\n<p><span style=\"color: #00aeef\"><a style=\"color: #00aeef\" href=\"#question12\"><strong>Q: How can I link different datasets? <\/strong><\/a><\/span><\/p>\n<p><span style=\"color: #00aeef\"><a style=\"color: #00aeef\" href=\"#question13\"><strong>Q: How do I query AIR\u00b7MS?<\/strong><\/a><\/span><\/p>\n<p><span style=\"color: #00aeef\"><a style=\"color: #00aeef\" href=\"#question14\"><strong>Q: Can I create a dataset on AIR\u00b7MS to share with my collaborators?<\/strong><\/a><\/span><\/p>\n<p><span style=\"color: #00aeef\"><a style=\"color: #00aeef\" href=\"#question15\"><strong>Q: I am in the middle of a research project, but would like to move to AIR\u00b7MS. I have a list of EPIC Medical Record Numbers (MRN) representing the patient cohort. Does the AIR\u00b7MS Mount Sinai Data Warehouse (MSDW) OMOP PHI dataset utilize the EPIC MRN number?<\/strong><\/a><\/span><\/p>\n<p>\u00a0<\/p>\n<p><strong><span style=\"color: #00aeef\">GENERAL<\/span><\/strong><\/p>\n<p><strong><span style=\"color: #00aeef\"><span class=\"TextRun SCXW100594254 BCX8\" lang=\"EN-US\" xml:lang=\"EN-US\" data-contrast=\"auto\"><span class=\"NormalTextRun SCXW100594254 BCX8\"><a id=\"question1\"><\/a>Q: What do I need to<\/span><a id=\"question1\"><\/a><span class=\"NormalTextRun SCXW100594254 BCX8\"> have before<\/span> <span class=\"NormalTextRun SCXW100594254 BCX8\">request<\/span><span class=\"NormalTextRun SCXW100594254 BCX8\">ing<\/span><span class=\"NormalTextRun SCXW100594254 BCX8\"> AIR\u00b7MS access<\/span><span class=\"NormalTextRun SCXW100594254 BCX8\"> (pre-requisites)<\/span><\/span><span class=\"NormalTextRun SCXW100594254 BCX8\">?<\/span><\/span><\/strong><\/p>\n<p><strong><span style=\"color: #00aeef\"><span class=\"EOP SCXW100594254 BCX8\" data-ccp-props=\"{}\">A:\u00a0<\/span><\/span><\/strong><span style=\"color: #000000\" data-contrast=\"auto\">To request and be provided with access to AIR\u00b7MS you need a \u201cSchool Network Account\u201d (i.e. @mssm.edu). <\/span><\/p>\n<ul>\n<li><span style=\"color: #000000\" data-contrast=\"auto\">If you have a \u201cHospital Account\u201d (i.e. @mountsinai.org) you can request a school account <\/span><strong><a href=\"https:\/\/wiki.mountsinai.org\/display\/ITSECURITY\/Sailpoint+Documentation\">here<\/a><\/strong><\/li>\n<li><span data-contrast=\"auto\"><span style=\"color: #000000\">Access requests will be submitted via SailPoint \u2013 to access Sailpoint you will need to be on the Mount Sinai Network (i.e. on-site and connected to WIFI) or connected to<\/span> <strong><a href=\"https:\/\/itsecurity.mssm.edu\/vpn-steps\/\">Mount Sinai VPN<\/a><\/strong>. <\/span><span data-ccp-props=\"{}\">\u00a0<\/span><\/li>\n<li><span style=\"color: #000000\" data-contrast=\"auto\">To request access to datasets with personal health information (<a href=\"https:\/\/labs.icahn.mssm.edu\/minervalab\/air%c2%b7ms-glossary-phi\/\">PHI<\/a>) (i.e. all datasets but Deidentified <a href=\"https:\/\/labs.icahn.mssm.edu\/minervalab\/air%e2%80%a7ms-glossary-omop\/\">OMOP<\/a>-mapped EHR data and DE-SynPUF OMOP), you will need an approved <a href=\"https:\/\/labs.icahn.mssm.edu\/minervalab\/air%e2%80%a7ms-glossary-irb\/\">IRB<\/a> referencing AIR\u00b7MS platform (IRB # 20-01288) to access and store data. <\/span><\/li>\n<li><span style=\"color: #000000\">This IRB will need to be attached to the <a href=\"https:\/\/labs.icahn.mssm.edu\/minervalab\/air%c2%b7ms-glossary-dua\/\">DUA<\/a> form during access request on SailPoint \u2013 please make sure to have this in place before requesting AIR\u00b7MS access for PHI-containing datasets.\u00a0<\/span><\/li>\n<\/ul>\n<p>\u00a0<\/p>\n<p><strong><span style=\"color: #00aeef\"><span class=\"TextRun SCXW244214501 BCX8\" lang=\"EN-US\" xml:lang=\"EN-US\" data-contrast=\"auto\"><span class=\"NormalTextRun SCXW244214501 BCX8\"><a id=\"question2\"><\/a>Q: How do I request access to AIR\u00b7MS datasets?<\/span><\/span><span class=\"EOP SCXW244214501 BCX8\" data-ccp-props=\"{}\">\u00a0<\/span><\/span><\/strong><\/p>\n<p><span style=\"color: #00aeef\"><strong>A: <\/strong><\/span><span data-contrast=\"auto\"><span style=\"color: #000000\">Once you have all requirements (see above) \u2013 you can request access to AIR\u00b7MS via<\/span> <strong><a href=\"https:\/\/sailpoint.mountsinai.org\/login.jsf?prompt=true\"><span class=\"fontColorThemeSecondary\">Mount Sinai SailPoint<\/span><\/a><\/strong>. <span style=\"color: #000000\">You can find a detailed guide on access request<\/span> <strong><a href=\"https:\/\/mtsinai.sharepoint.com\/:b:\/s\/airms\/EeaqEEucUC9MlEwRMDTbkjYBAEA9JfhDNSHARDKQKPBUtw?e=Wcz3ke\">here<\/a><\/strong>.<\/span><\/p>\n<ul>\n<li><strong><span style=\"color: #000000\">On SailPoint you will search for appropriate access options:\u00a0<\/span><\/strong><\/li>\n<\/ul>\n<table style=\"font-weight: 400\" data-tablestyle=\"MsoTableGrid\" data-tablelook=\"1184\">\n<tbody>\n<tr>\n<td data-celllook=\"0\">\n<p style=\"text-align: center\"><span style=\"color: #221f72\"><strong>Dataset\u00a0<\/strong><\/span><\/p>\n<\/td>\n<td style=\"text-align: center\" data-celllook=\"0\"><span style=\"color: #221f72\"><strong>User Selection\u00a0<\/strong><\/span><\/td>\n<td style=\"text-align: center\" data-celllook=\"0\">\n<p style=\"text-align: center\">\u00a0<\/p>\n<\/td>\n<td data-celllook=\"0\">\n<p style=\"text-align: center\"><span style=\"color: #221f72\"><strong>Approval Process\u00a0<\/strong><\/span><\/p>\n<\/td>\n<\/tr>\n<tr>\n<td data-celllook=\"0\"><span style=\"color: #d80b8c\">DE-SynPUF data (synthetic OMOP dataset)\u00a0<\/span><\/td>\n<td data-celllook=\"0\"><span style=\"color: #d80b8c\">AIR\u00b7MS Production DE-SynPUF OMOP (MSSM)\u00a0<\/span><\/td>\n<td data-celllook=\"0\">\u00a0<\/td>\n<td data-celllook=\"0\"><span style=\"color: #d80b8c\">Automatic approval after submission\u00a0<\/span><\/td>\n<\/tr>\n<tr>\n<td data-celllook=\"0\"><span style=\"color: #d80b8c\">De-identified OMOP-mapped EHR data\u00a0<\/span><\/td>\n<td data-celllook=\"0\"><span style=\"color: #d80b8c\">AIR\u00b7MS Production OMOP De-ID (MSSM)\u00a0<\/span><\/td>\n<td data-celllook=\"0\">\u00a0<\/td>\n<td data-celllook=\"0\"><span style=\"color: #d80b8c\">Automatic approval after submission and DUA signature on SailPoint\u00a0<\/span><\/td>\n<\/tr>\n<tr>\n<td data-celllook=\"0\"><span style=\"color: #d80b8c\">OMOP-mapped EHR data with PHI\u00a0<\/span><\/td>\n<td data-celllook=\"0\"><span style=\"color: #d80b8c\">AIR\u00b7MS Production OMOP PHI (MSSM)\u00a0<\/span><\/td>\n<td data-celllook=\"0\">\u00a0<\/td>\n<td data-celllook=\"0\"><span style=\"color: #d80b8c\">IRB required and manually approved after review\u00a0<\/span><\/td>\n<\/tr>\n<tr>\n<td data-celllook=\"0\"><span style=\"color: #d80b8c\">Pathology Metadata\u00a0<\/span><\/td>\n<td data-celllook=\"0\"><span style=\"color: #d80b8c\">AIR\u00b7MS Production Pathology Metadata (MSSM)\u00a0<\/span><\/td>\n<td data-celllook=\"0\">\u00a0<\/td>\n<td data-celllook=\"0\"><span style=\"color: #d80b8c\">IRB required and manually approved after review\u00a0<\/span><\/td>\n<\/tr>\n<tr>\n<td data-celllook=\"0\"><span style=\"color: #d80b8c\">Radiology Metadata\u00a0<\/span><\/td>\n<td data-celllook=\"0\"><span style=\"color: #d80b8c\">AIR\u00b7MS Production Radiology Metadata (MSSM)\u00a0<\/span><\/td>\n<td data-celllook=\"0\">\u00a0<\/td>\n<td data-celllook=\"0\"><span style=\"color: #d80b8c\">IRB required and manually approved after review\u00a0<\/span><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p><span style=\"color: #000000\">Abbreviations: AIR\u00b7MS, Artificial Intelligence-Ready Mount Sinai; De-ID, De-identified; DUA, Data Use Agreement; EHR, Electronic Health Record; IRB, Institutional Review Board; MSSM, Icahn School of Medicine at Mount Sinai; OMOP, Observational Medical Outcomes Partnership; PHI, Protected Health Information; SYNPUF, Synthetic Public Use Files.\u00a0<\/span><\/p>\n<h2>\u00a0<\/h2>\n<p><span style=\"color: #00aeef\"><strong><a id=\"question3\"><\/a>Q: I submitted a SailPoint request\u2014how do I know if it&#8217;s approved?<\/strong><\/span><\/p>\n<p><strong><span style=\"color: #00aeef\">A:\u00a0<\/span><\/strong><span style=\"color: #000000\">You will be notified via email once your request is processed. If your request is denied, you will receive details on the grounds for denial and guidance on corrective measures that can be undertaken. The process takes <i>7-10 business days<\/i> and is subject to variation.\u00a0\u00a0<\/span><\/p>\n<h2>\u00a0<\/h2>\n<p><strong><span style=\"color: #00aeef\"><a id=\"question4\"><\/a>Q: How do I track the progress of my access request?<\/span><\/strong><\/p>\n<p><span style=\"color: #00aeef\"><strong>A: <\/strong><\/span><span style=\"color: #000000\">You may monitor the progress of your request status by logging into SailPoint.\u00a0\u00a0<\/span><\/p>\n<p>\u00a0<\/p>\n<p><span style=\"color: #00aeef\"><strong><a id=\"question5\"><\/a>Q: My access was denied. What should I do?<\/strong><\/span><\/p>\n<p><strong><span style=\"color: #00aeef\">A:\u00a0<\/span><\/strong><span style=\"color: #000000\">Make sure you selected the correct role:\u00a0<\/span><\/p>\n<ul>\n<li style=\"list-style-type: none\">\n<ul>\n<li><span style=\"color: #000000\">Mount Sinai users: AIR\u00b7MS Production &lt;dataset name&gt; (MSSM)\u00a0<\/span><\/li>\n<li><span style=\"color: #000000\">HPI users: AIR\u00b7MS Production &lt;dataset name&gt; (HPI)\u00a0<\/span><\/li>\n<\/ul>\n<\/li>\n<li><span style=\"color: #000000\">Also make sure your IRB covers usage of AIR\u00b7MS explicitly if you requested access to non-deidentified datasets.\u00a0<\/span><\/li>\n<\/ul>\n<p><span style=\"color: #000000\" data-ccp-props=\"{}\">\u00a0<\/span><\/p>\n<p><span style=\"color: #00aeef\"><strong>GETTING STARTED &amp; ENVIRONMENT SETUP<\/strong>\u00a0<\/span><\/p>\n<p><span style=\"color: #000000\"><span style=\"color: #00aeef\"><strong><a id=\"question6\"><\/a>Q: What are my username and password?<\/strong><\/span><\/span><\/p>\n<p><span style=\"color: #000000\"><span style=\"color: #00aeef\"><strong>A:<\/strong><\/span>\u00a0<\/span><span style=\"color: #000000\">To connect to AIR\u00b7MS you will need to provide your username and password. <\/span><\/p>\n<ul>\n<li style=\"list-style-type: none\">\n<ul>\n<li><span style=\"color: #000000\">Your username corresponds to your Sinai Network ID (e.g. &#8220;Angela Pattinson&#8221; will have a Sinai network id like pattia01). <\/span><\/li>\n<li><span style=\"color: #000000\">Your password is your Sinai password used to connect to any Sinai resources. <\/span><\/li>\n<\/ul>\n<\/li>\n<li><span style=\"color: #000000\">You WON\u2019T need to add the VIP token to your Sinai password.\u00a0<\/span><\/li>\n<\/ul>\n<h2>\u00a0<\/h2>\n<p><span style=\"color: #00aeef\"><strong><a id=\"question7\"><\/a>Q: How do I connect to AIR\u00b7MS?<\/strong><\/span><\/p>\n<p><strong><span style=\"color: #00aeef\">A:\u00a0<\/span><\/strong><span style=\"color: #000000\">To connect to AIR\u00b7MS you need to be on the Mount Sinai Network. <\/span><\/p>\n<ul>\n<li style=\"list-style-type: none\">\n<ul>\n<li><span style=\"color: #000000\">Connect to the Mount Sinai network either by connecting\u202fto the LAN or MSSM Green while on campus or by using the VPN connection if not on campus. <\/span><\/li>\n<li><span style=\"color: #000000\">If using VPN, make sure you click on the \u201cTunnel\u201d button on the VPN splash screen.\u00a0<\/span><\/li>\n<\/ul>\n<\/li>\n<li><span style=\"color: #000000\">You can follow the <strong><a href=\"https:\/\/github.mountsinai.org\/AIRMS\/airms-researcher-tutorials-minerva\">tutorial<\/a>\u00a0<\/strong>to connect to AIR\u00b7MS from Python or R environments. <\/span>\n<ul>\n<li><span style=\"color: #000000\"><strong>ATTENTION: you need to be on Mount Sinai Network to access the GitHub Page.\u00a0<\/strong><\/span><\/li>\n<\/ul>\n<\/li>\n<li><span style=\"color: #000000\">You can connect to AIR\u00b7MS via your local device or from Minerva High Performance Computing (<a href=\"https:\/\/labs.icahn.mssm.edu\/minervalab\/air%c2%b7ms-glossary-hpc\/\">HPC<\/a>). <\/span>\n<ul>\n<li><span style=\"color: #000000\"><strong>ATTENTION: to connect from your local device you need to be compliant with cyber-security and install Microsoft Company Portal on your device.<\/strong>\u00a0\u00a0\u00a0<\/span><\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<h2>\u00a0<\/h2>\n<p><strong><span style=\"color: #00aeef\"><a id=\"question8\"><\/a>Q: I can\u2019t reach the SailPoint or GitHub tutorial pages.<\/span><\/strong><\/p>\n<p><strong><span style=\"color: #00aeef\">A:\u00a0<\/span><\/strong><span style=\"color: #000000\">Ensure you&#8217;re connected to the Mount Sinai network or VPN.\u00a0\u00a0<\/span><\/p>\n<h2>\u00a0<\/h2>\n<p><strong><span style=\"color: #00aeef\"><a id=\"question9\"><\/a>Q: Can I connect to AIR\u00b7MS using a database client?<\/span><\/strong><\/p>\n<p><strong><span style=\"color: #00aeef\">A:\u00a0<\/span><\/strong><span style=\"color: #000000\">We do not actively support database clients to connect to AIR\u00b7MS. However, you can configure clients, for example <strong><a href=\"https:\/\/dbeaver.io\/\">DBeaver<\/a>,<\/strong> on your own to connect to AIR\u00b7MS. You can find a guide on how to use DBeaver here: <strong><a href=\"https:\/\/github.mountsinai.org\/AIRMS\/airms-researcher-tutorials-minerva\">Researcher Tutorials<\/a><\/strong>.\u00a0<\/span><\/p>\n<ul>\n<li style=\"list-style-type: none\">\n<ul>\n<li><strong><span style=\"color: #000000\">ATTENTION: if you connect from your personal device, the device has to be compliant with cyber-security by installing Microsoft Company Portal.\u00a0\u00a0\u00a0<\/span><\/strong><\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<p><span style=\"color: #000000\" data-ccp-props=\"{}\">\u00a0<\/span><\/p>\n<p><span style=\"color: #00aeef\"><strong>DATA<\/strong>\u00a0<\/span><\/p>\n<p><span style=\"color: #00aeef\"><strong><a id=\"question10\"><\/a>Q: How is data stored on AIR\u00b7MS?<\/strong><\/span><\/p>\n<p><span style=\"color: #00aeef\"><strong>A:<\/strong>\u00a0<\/span><span style=\"color: #000000\">AIR\u00b7MS uses an extremely fast, in-memory databased called SAP HANA (High-performance ANalytic Appliance) to stored structured datasets. Each dataset is stored in a separate schema on our AIR\u00b7MS HANA database. Users need to request access to each schema separately and be approved. \u00a0<\/span><\/p>\n<ul>\n<li><span style=\"color: #000000\">Additional unstructured data (e.g. <a href=\"https:\/\/labs.icahn.mssm.edu\/minervalab\/air%c2%b7ms-glossary-dicom\/\">DICOM<\/a> images, Pathology Whole Slide Imaging) are stored on Minerva and can be linked to structured AIR\u00b7MS data through specimen IDs.\u00a0\u00a0<\/span><\/li>\n<\/ul>\n<h2>\u00a0<\/h2>\n<p><span style=\"color: #00aeef\"><strong><a id=\"question11\"><\/a>Q: What data are available on AIR\u00b7MS?<\/strong><\/span><\/p>\n<p><strong><span style=\"color: #00aeef\">A: <\/span><\/strong><span style=\"color: #000000\">The current list of datasets and their attributes is available on AIR\u00b7MS can be found <strong><a href=\"https:\/\/mtsinai.sharepoint.com\/sites\/airms\/SitePages\/Data-Modalities(2).aspx\">here<\/a><\/strong>.<\/span><\/p>\n<h2>\u00a0<\/h2>\n<p><strong><span style=\"color: #00aeef\"><a id=\"question12\"><\/a>Q: How can I link different datasets?<\/span><\/strong><\/p>\n<p><span style=\"color: #00aeef\"><strong>A: <\/strong><\/span><span style=\"color: #000000\">If you have access to multiple schemas at the same time, you can link tables using the common <a href=\"https:\/\/researchroadmap.mssm.edu\/reference\/systems\/epic\/\">Epic<\/a> <a href=\"https:\/\/labs.icahn.mssm.edu\/minervalab\/air%e2%80%a7ms-glossary-mrn\/\">MRN<\/a> that is stored in PHI-containing datasets.\u00a0\u00a0<\/span><\/p>\n<h2>\u00a0<\/h2>\n<p><strong><span style=\"color: #00aeef\"><a id=\"question13\"><\/a>Q: How do I query AIR\u00b7MS?<\/span><\/strong><\/p>\n<p><strong><span style=\"color: #00aeef\">A: <\/span><\/strong><span style=\"color: #000000\">To query data on AIR\u00b7MS you can directly use Structured Query Language (SQL), or you can use language-specific (R or Python) libraries that allow you to interact with the database more intuitively. You can find more information <strong><a href=\"https:\/\/github.mountsinai.org\/AIRMS\/airms-researcher-tutorials-minerva\">here<\/a>.<\/strong>\u00a0<\/span><\/p>\n<ul>\n<li><span style=\"color: #000000\">More information on SQL and SQL HANA dialect can be found <a href=\"https:\/\/help.sap.com\/docs\/SAP_HANA_PLATFORM\/4fe29514fd584807ac9f2a04f6754767\/209f5020751910148fd8fe88aa4d79d9.html\"><strong>here<\/strong>.<\/a>\u00a0<\/span><\/li>\n<\/ul>\n<h2>\u00a0<\/h2>\n<p><strong><span style=\"color: #00aeef\"><a id=\"question14\"><\/a>Q: Can I create a dataset on AIR\u00b7MS to share with my collaborators?<\/span><\/strong><\/p>\n<p><strong><span style=\"color: #00aeef\">A: <\/span><\/strong><span style=\"color: #000000\">AIR\u00b7MS does not support multi-user personal schemas yet. However, every user is provisioned with a user schema named as their Mount Sinai user ID on which they can store personal tables.\u00a0\u00a0<\/span><\/p>\n<p>\u00a0<\/p>\n<p><strong><span style=\"color: #00aeef\"><a id=\"question15\"><\/a>Q: I am in the middle of a research project, but would like to move to AIR\u00b7MS. I have a list of EPIC Medical Record Numbers (MRN)<\/span><\/strong><strong><span style=\"color: #00aeef\"> representing the patient cohort. Does the AIR\u00b7MS Mount Sinai Data Warehouse (MSDW) OMOP PHI dataset utilize the EPIC MRN number?<\/span><\/strong><\/p>\n<p><strong><span style=\"color: #00aeef\">A: <\/span><\/strong><span style=\"color: #000000\">No, the MSDW OMOP PHI dataset uses its own MRN convention. There is however an extended OMOP attribute which represents the EPIC MRN number. This attribute on the PERSON table is XTN_PATIENT_EPIC_MRN.\u00a0\u00a0<\/span><\/p>\n<p>[\/et_pb_text][\/et_pb_column][\/et_pb_row][\/et_pb_section]<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Scientific Computing and Data \/ AIR\u00b7MS (AI Ready Mount Sinai) \/ AIR\u00b7MS Frequently Asked Questions (FAQ) &nbsp; AIR\u00b7MS Frequently Asked Questions (FAQ)GENERALQ: What do I need to\u00a0have before\u00a0requesting\u00a0AIR\u00b7MS access\u00a0(pre-requisites)?Q: How do I request access to AIR\u00b7MS datasets?Q: I submitted a SailPoint request\u2014how do I know if it\u2019s approved?Q: How do I track the progress of [&hellip;]<\/p>\n","protected":false},"author":700,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_et_pb_use_builder":"on","_et_pb_old_content":"","_et_gb_content_width":"","footnotes":""},"class_list":["post-11876","page","type-page","status-publish","hentry"],"aioseo_notices":[],"_links":{"self":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages\/11876","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/users\/700"}],"replies":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/comments?post=11876"}],"version-history":[{"count":53,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages\/11876\/revisions"}],"predecessor-version":[{"id":13479,"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/pages\/11876\/revisions\/13479"}],"wp:attachment":[{"href":"https:\/\/labs.icahn.mssm.edu\/minervalab\/wp-json\/wp\/v2\/media?parent=11876"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}