{"id":419,"date":"2016-07-19T14:19:15","date_gmt":"2016-07-19T14:19:15","guid":{"rendered":"http:\/\/labs.icahn.mssm.edu\/maayanlab\/?page_id=419"},"modified":"2025-09-06T03:32:58","modified_gmt":"2025-09-06T03:32:58","slug":"alumni","status":"publish","type":"page","link":"https:\/\/labs.icahn.mssm.edu\/maayanlab\/team\/alumni\/","title":{"rendered":"Alumni"},"content":{"rendered":"

\"\"<\/p>\n

Former Ma’ayan Lab PhD students, postdoctoral fellows, bioinformaticians, and computational systems biologists have authored or co-authored publications in leading journals, including Nature<\/em>, Science<\/em>, PNAS<\/em>, Nature Genetics<\/em>, Nature Medicine<\/em>, Bioinformatics<\/em> and Science Signaling<\/em>. The Ma’ayan Lab alumni have gone to leadership positions in industry and have also been recruited to academic positions. Several of our bioinformatics and computational systems biology research trainees<\/a><\/strong> have entered PhD programs at Icahn School of Medicine at Mount Sinai, Princeton, MIT, Columbia, Duke, Cornell, and University of Pennsylvania.<\/p>\n

MD\/PhD Student<\/h3>\n

\"\"<\/strong>
\nAlexandra Keenan, PhD\u00a0<\/strong>
\nTraining Period in Lab: 2017-2019
\nThesis: Inferring Transcriptional Regulation by Data Integration<\/p>\n

\n

PhD Students<\/h3>\n

\"\"
\nZichen Wang, PhD<\/strong>
\nTraining Period in Lab: 2013-2016
\nThesis:\u00a0Methods for Collecting, Improving and Exploring Mammalian Gene Expression Signatures<\/p>\n

\n

\"duan_headshot\"
\nQiaonan Duan, PhD<\/strong>
\nTraining Period in Lab: 2012-2016
\nThesis: Harnessing the LINCS L1000 Data for Drug Discovery and Drug Response Analysis<\/p>\n

\n

\"yan_kou.fw\"
\nYan Kou, PhD<\/strong>
\nTraining Period in Lab: 2011-2015
\nThesis: Big Data Analytics for Understanding Mechanism of Human Disease<\/p>\n

\n

\"h_xu.fw\"
\nHuilei Xu, PhD<\/strong>
\nTraining Period in Lab: 2009-2012
\nThesis:\u00a0Analysis of Transcriptional Networks in mESCs<\/p>\n

\n

Master’s Student<\/h3>\n

\"\"
\nEryk Kropiwnicki, MS<\/strong>
\nTraining Period in Lab: 2019-2020<\/p>\n

\n

Research Assistant Professor<\/strong><\/h3>\n

\"\"
\nAlexander Lachmann, PhD<\/strong><\/p>\n

\n

Postdoctoral Fellows<\/h3>\n

\"\"
\nMinji Jeon, PhD<\/strong>
\nTraining Period in Lab: 2020-2022<\/p>\n

\n

\"\"
\nKathleen Jagodnik, PhD<\/strong>
\nTraining Period in Lab: 2016-2021<\/p>\n

\n

\"\"
\nNicolas Fernandez, PhD<\/strong>
\nTraining Period in Lab: 2013-2017<\/p>\n

\n

\"rouillard_headshot\"
\nAndrew Rouillard, PhD<\/strong>
\nTraining Period in Lab: 2013-2016
\nResearch Focus:\u00a0Inferring Cell Signaling Pathways from LINCS<\/p>\n

\n

\"clark_headshot\"
\nNeil Clark, PhD<\/strong>
\nTraining Period in Lab: 2011-2015
\nResearch Focus:\u00a0Statistical Methods for Network Analysis in Systems Biology<\/p>\n

\n

\"b_macarthur.fw\"
\nBen MacArthur, PhD<\/strong>
\nTraining Period in Lab: 2008-2011
\nResearch Focus:\u00a0Systems Biology of mESCs<\/p>\n

\n

\"a_mazloom.fw\"
\nAmin Mazloom, PhD<\/strong>
\nTraining Period in Lab: 2008-2011
\nResearch Focus:\u00a0Network Analysis of NURSA HT IP-MS Proteomics<\/p>\n

\n

Bioinformaticians, Software Engineers, and Data Scientists<\/h3>\n

\"\"<\/strong>
\nGiacomo Marino, ScB, AB<\/strong>
\nTraining Period in Lab: 2022-2025<\/p>\n

\n

\"\"<\/strong>
\nNasheath Ahmed, BS, AB<\/strong>
\nTraining Period in Lab: 2022-2024<\/p>\n

\n

\"\"<\/strong>
\nStephanie Olaiya, ScB<\/strong>
\nTraining Period in Lab: 2023-2024<\/p>\n

\n

\"\"<\/strong>
\nEden Deng, BS <\/strong>
\nTraining Period in Lab: 2023-2024<\/p>\n

\n

\"\"<\/strong>
\nZhuorui (Sherry) Xie, BA <\/strong>
\nTraining Period in Lab: 2020-2024<\/p>\n

\n

\"\"<\/strong>
\nJuncheng Pan, BS <\/strong>
\nTraining Period in Lab: 2022<\/p>\n

\n

\"\"
\nEryk Kropiwnicki, MS<\/strong>
\nTraining Period in Lab: 2020-2022<\/p>\n

\n

\"\"
\nMegan Wojciechowicz, MS<\/strong>
\nTraining Period in Lab: 2017-2019<\/p>\n

\n

\"torre\"
\nDenis Torre, BS<\/strong>
\nTraining Period in Lab: 2016-2019<\/p>\n

\n

\"\"
\nShai Magidi, MEng<\/strong>
\nTraining Period in Lab: 2016-2017<\/p>\n

\n

\"\"
\nAnders Dohlman, BA<\/strong>
\nTraining Period in Lab: 2015-2017<\/p>\n

\n

\"gundersen_headshot\"
\nGregory Gundersen, MA<\/strong>
\nTraining Period in Lab: 2014-2016<\/p>\n

\n

\"mm.fw\"
\nMichael McDermott, BS<\/strong>
\nTraining Period in Lab: 2014-2016<\/p>\n

\n

\"m_jones.fw\"
\nMatthew Jones, BS<\/strong>
\nTraining Period in Lab: 2014-2015<\/p>\n

\n

\"ed_chen.fw\"
\nEdward Chen, MS<\/strong>
\nTraining Period in Lab: 2010-2013
\nResearch Focus:\u00a0Enrichr – Interactive and Collaborative HTML5 Gene List Enrichment Analysis Tool<\/p>\n

\n

\"ruth_d.fw\"
\nRuth Dannenfelser, MSE<\/strong>
\nTraining Period in Lab: 2010-2012
\nResearch Focus:\u00a0Software Tools for Systems Biology<\/p>\n

\n

\"simon_g.fw\"
\nSimon Gordonov, PhD<\/strong>
\nTraining Period in Lab: 2011-2012
\nResearch Focus:\u00a0Software Tools for Systems Biology<\/p>\n

\n

\"chris_tan.fw\"
\nChristopher Tan, MD<\/strong>
\nTraining Period in Lab: 2011-2012
\nResearch Focus:\u00a0Software Tools for Systems Biology<\/p>\n

\n

\"caroline_baroukh.fw\"
\nCaroline Baroukh, PhD<\/strong>
\nTraining Period in Lab: 2010-2011
\nResearch Focus:\u00a0Embryonic Stem Cells Atlas of Pluripotency Evidence (ESCAPE) Database<\/p>\n","protected":false},"excerpt":{"rendered":"

Former Ma’ayan Lab PhD students, postdoctoral fellows, bioinformaticians, and computational systems biologists have authored or co-authored publications in leading journals, including Nature, Science, PNAS, Nature Genetics, Nature Medicine, Bioinformatics and Science Signaling. The Ma’ayan Lab alumni have gone to leadership positions in industry and have also been recruited to academic positions. Several of our bioinformatics […]<\/p>\n","protected":false},"author":51,"featured_media":0,"parent":15,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-419","page","type-page","status-publish","hentry"],"aioseo_notices":[],"_links":{"self":[{"href":"https:\/\/labs.icahn.mssm.edu\/maayanlab\/wp-json\/wp\/v2\/pages\/419","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/labs.icahn.mssm.edu\/maayanlab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/labs.icahn.mssm.edu\/maayanlab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/maayanlab\/wp-json\/wp\/v2\/users\/51"}],"replies":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/maayanlab\/wp-json\/wp\/v2\/comments?post=419"}],"version-history":[{"count":152,"href":"https:\/\/labs.icahn.mssm.edu\/maayanlab\/wp-json\/wp\/v2\/pages\/419\/revisions"}],"predecessor-version":[{"id":2836,"href":"https:\/\/labs.icahn.mssm.edu\/maayanlab\/wp-json\/wp\/v2\/pages\/419\/revisions\/2836"}],"up":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/maayanlab\/wp-json\/wp\/v2\/pages\/15"}],"wp:attachment":[{"href":"https:\/\/labs.icahn.mssm.edu\/maayanlab\/wp-json\/wp\/v2\/media?parent=419"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}