{"id":2494,"date":"2022-12-20T11:44:55","date_gmt":"2022-12-20T16:44:55","guid":{"rendered":"https:\/\/labs.icahn.mssm.edu\/design\/?page_id=2494"},"modified":"2025-05-02T14:09:39","modified_gmt":"2025-05-02T18:09:39","slug":"publications","status":"publish","type":"page","link":"https:\/\/labs.icahn.mssm.edu\/greenbaum-lab\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"

[et_pb_section fb_built=”1″ admin_label=”Fullwidth Header – Background Title Description – no slider – Section 1 ” module_class=”header-title-desciption-no-slider-section1″ _builder_version=”4.9.0″ _module_preset=”default” background_color=”rgba(0,174,239,0.09)” background_enable_color=”off” background_image=”https:\/\/labs.icahn.mssm.edu\/greenbaum-lab-new\/wp-content\/uploads\/sites\/573\/2022\/07\/ai-002-1.jpg” parallax=”on” custom_padding=”||||false|false” bottom_divider_style=”ramp2″ bottom_divider_color=”#FFFFFF” bottom_divider_height=”11vw” bottom_divider_arrangement=”above_content” saved_tabs=”all” locked=”off” collapsed=”off”][et_pb_row column_structure=”1_2,1_2″ _builder_version=”4.9.0″ _module_preset=”default” background_color=”RGBA(0,0,0,0)” border_color_all=”RGBA(0,0,0,0)”][et_pb_column type=”1_2″ _builder_version=”4.9.0″ _module_preset=”default” custom_padding=”10%||8vw||false|false” custom_padding_tablet=”0vw||0vw||true|false” custom_padding_phone=”” custom_padding_last_edited=”on|tablet”][et_pb_text admin_label=”Text – Title” _builder_version=”4.9.0″ _module_preset=”b3e3ff14-5f5c-4608-8ecf-1885ce3da7aa” header_font=”||||||||” header_text_color=”#FFFFFF” header_font_size=”48px” header_line_height=”60px” custom_margin=”||10px||false|false” header_font_size_tablet=”40px” header_font_size_phone=”24px” header_font_size_last_edited=”on|desktop”]<\/p>\n

Publications<\/strong><\/h1>\n

[\/et_pb_text][et_pb_text admin_label=”Text – Description” _builder_version=”4.9.0″ _module_preset=”da86b6f0-f83c-4c7c-bdd8-3019777ddffe” text_font=”||||||||” text_text_color=”#FFFFFF” text_font_size=”20px” text_line_height=”32px” text_font_size_tablet=”15px” text_font_size_phone=”14px” text_font_size_last_edited=”on|desktop” disabled_on=”on|on|on” disabled=”on”]<\/p>\n

Our current research focuses on birth of the hair follicle niche, growth control and regeneration, and tissue regression and reorganization.<\/p>\n

[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_2″ _builder_version=”4.9.0″ _module_preset=”default” background_color=”RGBA(0,0,0,0)”][\/et_pb_column][\/et_pb_row][\/et_pb_section][et_pb_section fb_built=”1″ disabled_on=”off|off|off” admin_label=”Section 28 – Blog Style Publications” module_class=”section28_blog_style_publications” _builder_version=”4.9.0″ background_color=”#FFFFFF” background_image=”https:\/\/labs.icahn.mssm.edu\/greenbaum-lab-new\/wp-content\/uploads\/sites\/573\/2022\/10\/Background-1.png” parallax=”on” parallax_method=”off” custom_padding=”100px||||false|false” saved_tabs=”all” locked=”off” collapsed=”off”][et_pb_row column_structure=”1_3,1_3,1_3″ _builder_version=”3.25″ background_size=”initial” background_position=”top_left” background_repeat=”repeat” collapsed=”on”][et_pb_column type=”1_3″ _builder_version=”3.25″ custom_padding=”|||” custom_padding__hover=”|||”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Zhao N, Sebastiano V, Moshkina N, Mena N, Hultguist J, Jimenez-Morales D, Ma Y, Rialdi A, Albrecht R, Fenouil R, Sanchez-Aparicio MT, Ayllon J, Ravisankar S, Haddad B, Ho JSY, Low D, Jin J, Yurchenko V, Prinjha RK, Tarakhovsky, Squatrito M, Pinto D, Allette K, Byun M, Smith ML, Sebra R, Guccione E, Tumpey T, Krogan N, Greenbaum B, Van Bakel H, Garcia-Sastre A, Marazzi I.
\n<\/em>
\nInfluenza virus infection causes global RNAPII termination defects.<\/strong>
\nNature Structural & Molecular Biology 25: 885-893.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_3″ _builder_version=”3.25″ custom_padding=”|||” custom_padding__hover=”|||”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Kyi C, Roudko V, Sabado R, Saenger Y, Loging W, Mandeli J, Thin TH, Lehrer D, Donovan M, Posner M, Misiukiewicz K, Greenbaum B, Salazar A, Friedlander P, Bhardwaj N.
\n<\/em>
\nTheraputic immune modulation against solid cancers with intratumoral poly-ICLC: a pilot trial. <\/strong>
\nClinical Cancer Research \u2013 in press.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_3″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]<\/p>\n

Solovyov A*, Vabret N*, Arora KS, Snyder A, Funt SA, Bajorin DF, Rosenberg JE, Bhardwaj N, Ting DT*, Greenbaum BD*.
<\/em>
Global cancer transcriptome quantifies repeat element polarization between immunotherapy responsive and T cell suppressive classes.<\/strong>
Cell Reports 23:512-521.<\/p>\n

[\/et_pb_text][\/et_pb_column][\/et_pb_row][et_pb_row column_structure=”1_3,1_3,1_3″ _builder_version=”3.25″ background_size=”initial” background_position=”top_left” background_repeat=”repeat” collapsed=”on”][et_pb_column type=”1_3″ _builder_version=”3.25″ custom_padding=”|||” custom_padding__hover=”|||”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Chowell D, Morris GTL*, Grigg MC*, Weber KJ, Samstein MR, Makarov V, Fengshen K, Sviatoslav MK, Requena D, Riaz N, Greenbaum B, Carroll J, Garon E, Hyman DM, Zehir A, Solit D, Berger M, Zhou R, Rizvi NA*, Chan TA*.
\n<\/em>
\nPatient HLA class I genotype influences cancer response to checkpoint blockade immunotherapy.<\/strong>
\nScience 359:582-587.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_3″ _builder_version=”3.25″ custom_padding=”|||” custom_padding__hover=”|||”][et_pb_text admin_label=”Text” _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Abbate F, Badal B, Mendelson K, Aydin IT, Serasinghe MN, Iqbal R, Mohammed J, Solovyov A, Greenbaum BD, Chipuk JE, Celebi JT.
\n<\/em>
\nFBXW7 regulates a mitochondrial transcription program by modulating MITF.<\/strong>
\nPigment Cell Melanoma Research 31: 636-640.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_3″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]<\/p>\n

Guccione E, Marazzi I, Greenbaum BD, Low D.
<\/em>
Chromatin dependencies in cancer and inflammation.<\/strong>
Nature Reviews Molecular Cell Biology 19:245-261.<\/p>\n

[\/et_pb_text][\/et_pb_column][\/et_pb_row][et_pb_row column_structure=”1_4,1_4,1_4,1_4″ _builder_version=”3.25″ background_size=”initial” background_position=”top_left” background_repeat=”repeat” collapsed=”on”][et_pb_column type=”1_4″ _builder_version=”3.25″ custom_padding=”|||” custom_padding__hover=”|||”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]\u0141uksza M, Riaz N, Makarov V, Balachandran VP, Hellman MD, Solovyov A, Rizvi NA, Merghoub T, Levine AJ, Chan TA, Wolchok JD, Greenbaum BD.
\n<\/em>
\nA neoantigen fitness model predicts tumor response to checkpoint blockade immunotherapy.<\/strong>
\nNature 551:517-520.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_4″ _builder_version=”3.25″ custom_padding=”|||” custom_padding__hover=”|||”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Balachandran VP, \u0141uksza M, Zhao JN, Makarov V, Moral JA, Remark R, Herbst B, Askan G, Bhanot U, Senbabaoglu Y, Wells DK, Cary CIO, Grbovic-Huezo O, Attiyeh M, Medina B, Zhang J, Loo J, Saglimbeni J, Abu-Akeel M, Zappasodi R, Riaz N, Smoragiewicz M, Kelley ZL, Basturk O, Austrailian Pancreatic Genome Initiative, G\u00f6nen M, Levine AJ, Allen PJ, Fearon DT, Merad M, Gnjatic S, Iacobuzio-Donahue CA, Wolchok JD, DeMatteo RP, Chan TA, Greenbaum BD, Merghoub T*, Leach SD*.
\n<\/em>
\nNeoantigen quality and an immunogenic hotspot define long term pancreatic cancer survivors.<\/strong>
\nNature 551:512-516.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_4″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Greenbaum B, Vabret N.
\n<\/em>
\nMinority report: targeting emerging viruses before their emergence.<\/strong>
\nGene Therapy 10.1038\/gt.2017.93[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_4″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Greenbaum B, Pargellis AN
\n<\/em>
\nSelf-replicators emerge from a self-organizing prebiotic computer world.<\/strong>
\nArtificial Life 23:318-342.[\/et_pb_text][\/et_pb_column][\/et_pb_row][et_pb_row column_structure=”1_5,1_5,1_5,1_5,1_5″ _builder_version=”3.25″ background_size=”initial” background_position=”top_left” background_repeat=”repeat” collapsed=”on”][et_pb_column type=”1_5″ _builder_version=”3.25″ custom_padding=”|||” custom_padding__hover=”|||”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Johnson KEE, Song T, Greenbaum B, Ghedin E.
\n<\/em>
\nGetting the flu: 5 key facts about influenza virus evolution.<\/strong>
\nPLoS Pathogens 13:e1006450.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”3.25″ custom_padding=”|||” custom_padding__hover=”|||”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Chatenay D, Cocco S, Greenbaum B, Monasson R, Netter P.
\n<\/em>
\nEvolutionary constraints on coding sequences at the nucleotidic level: a statistical physics approach.<\/strong>
\nBiology: Self\/Nonself Evolution, Species and Complex Traits Evolution, Methods and Concepts 329-367.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Lavin Y, Kobayashi S, Leader A, Amir ED, Elefant N, Bigenwald C, Remark R, Sweeney R, Becker CD, Levine JH, Meinhof K, Chow A, Kim-Shulze S, Wolf A, Medaglia C, Li H, Rytlewski JA, Emerson RO, Solovyov A, Greenbaum BD, Sanders C, Vignali M, Beasley MB, Flores R, Gnjatic S, Pe\u2019er D, Rahman A, Amit I, Merad M.
\n<\/em>
\nInnate immune landscape in early lung adenocarcinoma by paired single-cell analyses.<\/strong>
\nCell 169:750\u2013765.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Badal B*, Solovyov A*, Di Cecilia S, Chan JM, Chang LW, Iqbal R, Aydin IT, Rajan GS, Chen C, Abbate F, Arora KS, Tanne A, Gruber SB, Johnson TM, Fullen DR, Raskin L, Phelps R, Bhardwaj N, Bernstein E, Ting DT, Brunner G, Schadt EE, Greenbaum BD*, Celebi JT*.
\n<\/em>
\nTranscriptional dissection of melanoma identifies a high-risk subtype underlying TP53 family genes and epigenome deregulation.<\/strong>
\nJCI Insight 2:e9210.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text admin_label=”Text” _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Leonard AS, Weissman D, Greenbaum B, Ghedin E, Koelle K.
\n<\/em>
\nTransmission bottleneck size estimation from pathogen deep-sequencing data, with an application to human influenza A virus.<\/strong>
\nJournal of Virology 91:e00171-17.[\/et_pb_text][\/et_pb_column][\/et_pb_row][et_pb_row column_structure=”1_5,1_5,1_5,1_5,1_5″ _builder_version=”3.25″ background_size=”initial” background_position=”top_left” background_repeat=”repeat” collapsed=”on”][et_pb_column type=”1_5″ _builder_version=”3.25″ custom_padding=”|||” custom_padding__hover=”|||”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Aguirre S, Luthra P, Sanchez-Aparicio MT, Maestre AM, Patel J, Lamothe F, Fredericks AC, Tripathi S, Zhu T, Pintado-Silva J, Webb LG, Bernal-Rubio D, Solovyov A, Greenbaum B, Simon V, Basler CF, Mulder LC, Garc\u00eda-Sastre A, Fernandez-Sesma A.
\n<\/em>
\nDengue virus NS2B protein targets cGAS for degradation and prevents mitochondrial DNA sensing during infection.<\/strong>
\nNature Microbiology 2:17037.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”3.25″ custom_padding=”|||” custom_padding__hover=”|||”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Greenbaum BD.
\n<\/em>
\nInnate immune driven evolution via immunostimulatory RNA: viruses that mimic hosts, tumors that mimic viruses.<\/strong>
\nCurrent Opinion in Systems Biology 1:137-142.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Kotini AG, Chang CJ, Chow A, Yuan H, Ho TC, Wang T, Vora S, Solovyov A, Husser C, Olszewska M, Teruya-Feldstein J, Perumal D, Klimek VM, Spyridonidis A, Rampal RK, Silverman L, Reddy EP, Papaemmanuil E, Parekh S, Greenbaum BD, Leslie CS, Kharas MG, Papapetrou EP.
\n<\/em>
\nStage-specific human induced pluripotent stem cells map the progression of myeloid transformation to transplantable leukemia.<\/strong>
\nCell Stem Cell 20:315-328.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Desai N*, Sajed D*, Arora KS*, Solovyov A*, Rajurkar M, Bledsoe JR, Sil S, Amri R, Tai E, MacKenzie OC, Mino-Kenudson M, Aryee MJ, Ferrone CR, Berger DL, Rivera MN, Greenbaum BD*, Deshpande V*, Ting DT*.
\n<\/em>
\nDiverse repetitive element RNA expression defines epigenetic and immunologic features of colon cancer.<\/strong>
\nJCI Insight 2:e91078.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text admin_label=”Text” _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Vabret N, Bhardwaj N, Greenbaum BD.
\n<\/em>
\nSequence-specific sensing of nucleic acids.<\/strong>
\nTrends in Immunology 38:53-65.[\/et_pb_text][\/et_pb_column][\/et_pb_row][et_pb_row column_structure=”1_5,1_5,1_5,1_5,1_5″ _builder_version=”3.25″ background_size=”initial” background_position=”top_left” background_repeat=”repeat” collapsed=”on”][et_pb_column type=”1_5″ _builder_version=”3.25″ custom_padding=”|||” custom_padding__hover=”|||”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Lehmann J, Libchaber A, Greenbaum BD.
\n<\/em>
\nFundamental amino acid mass distributions and entropy costs in proteomes.<\/strong>
\nJournal of Theoretical Biology 410:119-124.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”3.25″ custom_padding=”|||” custom_padding__hover=”|||”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Chudnovskiy A, Mortha A, Kana V, Kennard A, Ramirez JD, Rahman A, Remark R, Mogno I, Ng R, Gnjatic S, Amir ED, Solovyov A, Greenbaum B, Clemente J, Faith J, Belkaid Y, Grigg ME, Merad M.
\n<\/em>
\nHost-protozoan interactions protect from mucosal infections through activation of the inflammasome.<\/strong>
\nCell 167:444-456.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Pargelis A, Greenbaum B.
\n<\/em>
\nDigital replicators emerge from a self-organizing prebiotic world.<\/strong>
\nProceedings of the Artificial Life Conference 2016 60-67.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Levine AJ, Ting DT, Greenbaum BD.
\n<\/em>
\np53 and the defenses against genome instability caused by transposons and repetitive elements.<\/strong>
\nBioEssays 38:508-513.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text admin_label=”Text” _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Fernandez MV, Miller E, Krammer F, Gopal R, Greenbaum BD, Bhardwaj N
\n<\/em>
\nIon efflux and influenza infection trigger NLRP3 inflammasome signaling in human dendritic cells.<\/strong>
\nJournal of Leukocyte Biology 99: 723-734.[\/et_pb_text][\/et_pb_column][\/et_pb_row][et_pb_row column_structure=”1_5,1_5,1_5,1_5,1_5″ _builder_version=”3.25″ background_size=”initial” background_position=”top_left” background_repeat=”repeat” collapsed=”on”][et_pb_column type=”1_5″ _builder_version=”3.25″ custom_padding=”|||” custom_padding__hover=”|||”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Kumar N, Bera BC, Greenbaum BD, Bhatia S, Sood R, Selvaraj P, Anand T, Tripathi BN, Virmani N.
\n<\/em>
\nRevelation of influencing factors in overall codon usage bias of equine influenza viruses. <\/strong>
\nPLoS One 11:e0154376.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”3.25″ custom_padding=”|||” custom_padding__hover=”|||”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Heaton NS, Moshkina N, Fenouil R, Gardner TJ, Aguirre S, Shah PS, Zhao N, Manganaro L, Hultquist JF, Noel J, Sachs D, Sachs DH, Hamilton J, Leon PE, Chawdury A, Tripathi S, Melegari C, Campisi L, Hai R, Metreveli G, Gamarnik AV, Garc\u00eda-Sastre A, Greenbaum B, Simon V, Fernandez-Sesma A, Krogan NJ, Mulder LC, van Bakel H, Tortorella D, Taunton J, Palese P, Marazzi I.
\n<\/em>
\nTargeting viral proteostasis limits influenza virus, HIV, and dengue virus infection.<\/strong>
\nImmunity 44:46-58.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Poon LL, Song T, Rosenfeld R, Lin X, Rogers MB, Zhou B, Sebra R, Halpin RA, Guan Y, Twaddle A, DePasse JV, Stockwell TB, Wentworth DE, Holmes EC, Greenbaum B, Peiris JS, Cowling BJ, Ghedin E.
\n<\/em>
\nQuantifying influenza virus diversity and transmission in humans. <\/strong>
\nNature Genetics 48:195-200.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Tanne A, Muniz LR, Puzio-Kuter A, Leonova KI, Gudkov AV, Ting DT, Monasson R, Cocco S, Levine AJ, Bhardwaj N, Greenbaum BD.
\n<\/em>
\nDistinguishing the immunostimulatory properties of noncoding RNAs expressed in cancer cells.<\/strong>
\nProceedings of the National Academy of Sciences 112:15154:15159.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text admin_label=”Text” _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Greenbaum BD, Ghedin E.
\n<\/em>
\nViral evolution: beyond drift and shift.<\/strong>
\nCurrent Opinion in Microbiology 26:109-115.[\/et_pb_text][\/et_pb_column][\/et_pb_row][et_pb_row column_structure=”1_5,1_5,1_5,1_5,1_5″ _builder_version=”3.25″ background_size=”initial” background_position=”top_left” background_repeat=”repeat” collapsed=”on”][et_pb_column type=”1_5″ _builder_version=”3.25″ custom_padding=”|||” custom_padding__hover=”|||”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Bonfante G, El-Aqqad M, Greenbaum B, Hoyrup M.
\n<\/em>
\n Immune systems in computer virology.<\/strong>
\nConference on Computability in Europe 2015 127-136.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”3.25″ custom_padding=”|||” custom_padding__hover=”|||”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Rogers MB, Song T, Sebra R, Greenbaum BD, Hamelin ME, Fitch A, Twaddle A, Cui L, Holmes EC, Boivin G, Ghedin E.
\n<\/em>
\n Intrahost dynamics of antiviral resistance in influenza a virus reflect complex patterns of segment linkage, reassortment, and natural selection.<\/strong>
\nmBio 6:e02464-14.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Greenbaum BD, Kumar P, Libchaber A.
\n<\/em>
\nUsing first passage statistics to extract environmentally dependent amino acid correlations.<\/strong>
\nPLoS One 9:e101665.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Wagh K, Bhatia A, Greenbaum BD, Bhanot G.
\n<\/em>
\nBird to human transmission biases and vaccine escape mutants in H5N1 infections.<\/strong>
\nPLoS One 9:e100754.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text admin_label=”Text” _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Greenbaum BD, Cocco S, Levine AJ, Monasson R.
\n<\/em>
\n Quantitative theory of entropic forces acting on constrained nucleotide sequences applied to viruses. <\/strong>
\nProceedings of the National Academy of Sciences 111:5054-5059.[\/et_pb_text][\/et_pb_column][\/et_pb_row][et_pb_row column_structure=”1_5,1_5,1_5,1_5,1_5″ _builder_version=”3.25″ background_size=”initial” background_position=”top_left” background_repeat=”repeat” collapsed=”on”][et_pb_column type=”1_5″ _builder_version=”3.25″ custom_padding=”|||” custom_padding__hover=”|||”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Szpara ML, Gatherer D, Ochoa A, Greenbaum B, Dolan A, Bowden RJ, Enquist LW, Legendre M, Davison AJ.
\n<\/em>
\nEvolution and diversity in human herpes simplex virus genomes.<\/strong>
\nJournal of Virology 88:1209-1227.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”3.25″ custom_padding=”|||” custom_padding__hover=”|||”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Chin AW, Greenbaum BD, Li OT, Webby RJ, Poon LL.
\n<\/em>
\n A statistical strategy to identify recombinant viral ribonucleoprotein of avian, human, and swine influenza A viruses with elevated polymerase activity.<\/strong>
\nInfluenza and Other Respiratory Viruses 7:969-978.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Greenbaum B, Kumar P, Libchaber A.
\n<\/em>
\nAmino acid distributions and the effect of optimal growth temperature.<\/strong>
\narXiv 1309.4761.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Levine AJ, Greenbaum B.
\n<\/em>
\nThe maintenance of epigenetic states by p53: the guardian of the epigenome.<\/strong>
\nOncotarget 3:1503-1504.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text admin_label=”Text” _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Greenbaum BD, Li OT, Poon LL, Levine AJ, Rabad\u00e1n R.
\n<\/em>
\n Viral reassortment as an information exchange between viral segments.<\/strong>
\nProceedings of the National Academy of Sciences 109:3341-3346.[\/et_pb_text][\/et_pb_column][\/et_pb_row][et_pb_row column_structure=”1_5,1_5,1_5,1_5,1_5″ _builder_version=”3.25″ background_size=”initial” background_position=”top_left” background_repeat=”repeat” collapsed=”on”][et_pb_column type=”1_5″ _builder_version=”3.25″ custom_padding=”|||” custom_padding__hover=”|||”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Jimenez-Baranda S*, Greenbaum B*, Manches O, Handler J, Rabad\u00e1n R, Levine A, Bhardwaj N.
\n<\/em>
\n Oligonucleotide motifs that disappear during the evolution of influenza virus in humans increase alpha interferon secretion by plasmacytoid dendritic cells.<\/strong>
\nJournal of Virology 85:3893-3904.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”3.25″ custom_padding=”|||” custom_padding__hover=”|||”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Greenbaum B, Trifonov V, Khiabanian H, Levine A, Rabad\u00e1n R.
\n<\/em>
\n The emergence of 2009 H1N1 pandemic influenza.<\/strong>
\nInfluenza Vaccines for the Future 95-111.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Solovyov A, Greenbaum B, Palacios G, Lipkin WI, Rabad\u00e1n R.
\n<\/em>
\n Host dependent evolutionary patterns and the origin of 2009 H1N1 pandemic influenza.<\/strong>
\nPLoS Currents Influenza.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Greenbaum BD, Rabad\u00e1n R, Levine AJ.
\n<\/em>
\n Patterns of oligonucleotide sequences in viral and host cell RNA identify mediators of the host innate immune system. <\/strong>
\nPLoS One 4:e5969.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text admin_label=”Text” _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Trifonov V, Khiabanian H, Greenbaum B, Rabad\u00e1n R.
\n<\/em>
\n The origin of the recent swine influenza A (H1N1) virus infecting humans.<\/strong>
\nEurosurveillance 14:1.[\/et_pb_text][\/et_pb_column][\/et_pb_row][et_pb_row column_structure=”1_5,1_5,1_5,1_5,1_5″ _builder_version=”3.25″ background_size=”initial” background_position=”top_left” background_repeat=”repeat” collapsed=”on”][et_pb_column type=”1_5″ _builder_version=”3.25″ custom_padding=”|||” custom_padding__hover=”|||”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Greenbaum BD, Levine AJ, Bhanot G, Rabad\u00e1n R.
\n<\/em>
\n Patterns of evolution and host gene mimicry in influenza and other RNA viruses.<\/strong>
\nPLoS Pathogens 4:e1000079.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”3.25″ custom_padding=”|||” custom_padding__hover=”|||”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Greenbaum BD, Habib S, Shizume K, Sundaram B.
\n<\/em>
\n Semiclassics of the chaotic quantum-classical transition.<\/strong>
\nPhysical Review E 76: 046215.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Greenbaum BD, Shizume K, Sundaram B.
\n<\/em>
\nConditions for the quantum-to-classical transition: trajectories versus phase-space distributions.<\/strong>
\nPhysical Review E 76: 036213.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Greenbaum BD, Habib S, Shizume K, Sundaram B.
\n<\/em>
\n The semiclassical regime of the chaotic quantum-classical transition..<\/strong>
\nChaos 15:033302.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text admin_label=”Text” _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]<\/p>\n

Habib S, Bhattacharya T, Greenbaum BD, Jacobs K, Shizume K, Sundaram B.
<\/em>
Chaos and quantum mechanics. <\/strong>
Annals of the New York Academy of Sciences 1045:308-332.<\/p>\n

[\/et_pb_text][\/et_pb_column][\/et_pb_row][et_pb_row column_structure=”1_5,1_5,1_5,1_5,1_5″ _builder_version=”3.25″ background_size=”initial” background_position=”top_left” background_repeat=”repeat” collapsed=”off”][et_pb_column type=”1_5″ _builder_version=”3.25″ custom_padding=”|||” custom_padding__hover=”|||”][et_pb_text _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)”]Pattanayak AK, Sundaram B, Greenbaum BD.
\n<\/em>
\nParameter scaling in the decoherent quantum-classical transition for chaotic systems.<\/strong>
\nPhysical Review Letters 90:014103.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”3.25″ custom_padding=”|||” custom_padding__hover=”|||”][et_pb_text disabled_on=”on|on|on” _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)” disabled=”on”]Greenbaum BD, Habib S, Shizume K, Sundaram B.
\n<\/em>
\n Semiclassics of the chaotic quantum-classical transition.<\/strong>
\nPhysical Review E 76: 046215.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text disabled_on=”on|on|on” _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)” disabled=”on”]Greenbaum BD, Shizume K, Sundaram B.
\n<\/em>
\nConditions for the quantum-to-classical transition: trajectories versus phase-space distributions.<\/strong>
\nPhysical Review E 76: 036213.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text disabled_on=”on|on|on” _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)” disabled=”on”]Greenbaum BD, Habib S, Shizume K, Sundaram B.
\n<\/em>
\n The semiclassical regime of the chaotic quantum-classical transition..<\/strong>
\nChaos 15:033302.[\/et_pb_text][\/et_pb_column][et_pb_column type=”1_5″ _builder_version=”4.9.0″ _module_preset=”default”][et_pb_text disabled_on=”on|on|on” admin_label=”Text” _builder_version=”4.9.0″ _module_preset=”default” text_font_size=”14px” text_line_height=”1.5em” background_color=”#FFFFFF” custom_padding=”20px|20px|20px|20px|true|true” link_option_url=”https:\/\/labs.icahn.mssm.edu\/rendl-lab\/wp-content\/uploads\/sites\/292\/2020\/01\/2019_Saxena.pdf” link_option_url_new_window=”on” box_shadow_style=”preset1″ box_shadow_vertical=”0px” box_shadow_blur=”40px” box_shadow_color=”rgba(0,0,0,0.14)” disabled=”on”]<\/p>\n

Habib S, Bhattacharya T, Greenbaum BD, Jacobs K, Shizume K, Sundaram B.
<\/em>
Chaos and quantum mechanics. <\/strong>
Annals of the New York Academy of Sciences 1045:308-332.<\/p>\n

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Lab Address <\/strong>
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Mailing Address <\/strong><\/p>\n

Lab Name
Icahn School of Medicine
at Mount Sinai
One Gustave L. Levy Place
<\/span>Annenberg
<\/span>New York, NY 10029<\/span><\/p>\n

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Lab Address <\/strong>
One Gustave L. Levy Place
Annenberg
New York, NY 10029<\/p>\n

Mailing Address <\/strong><\/p>\n

Lab Name
Icahn School of Medicine
at Mount Sinai
One Gustave L. Levy Place
<\/span>Annenberg
<\/span>New York, NY 10029<\/span><\/p>\n

[\/et_pb_text][\/et_pb_column][\/et_pb_row][\/et_pb_section]<\/p>\n","protected":false},"excerpt":{"rendered":"

PublicationsOur current research focuses on birth of the hair follicle niche, growth control and regeneration, and tissue regression and reorganization.Zhao N, Sebastiano V, Moshkina N, Mena N, Hultguist J, Jimenez-Morales D, Ma Y, Rialdi A, Albrecht R, Fenouil R, Sanchez-Aparicio MT, Ayllon J, Ravisankar S, Haddad B, Ho JSY, Low D, Jin J, Yurchenko V, […]<\/p>\n","protected":false},"author":545,"featured_media":0,"parent":0,"menu_order":4,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_et_pb_use_builder":"on","_et_pb_old_content":"","_et_gb_content_width":"","inline_featured_image":false,"footnotes":""},"class_list":["post-2494","page","type-page","status-publish","hentry"],"aioseo_notices":[],"_links":{"self":[{"href":"https:\/\/labs.icahn.mssm.edu\/greenbaum-lab\/wp-json\/wp\/v2\/pages\/2494","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/labs.icahn.mssm.edu\/greenbaum-lab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/labs.icahn.mssm.edu\/greenbaum-lab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/greenbaum-lab\/wp-json\/wp\/v2\/users\/545"}],"replies":[{"embeddable":true,"href":"https:\/\/labs.icahn.mssm.edu\/greenbaum-lab\/wp-json\/wp\/v2\/comments?post=2494"}],"version-history":[{"count":6,"href":"https:\/\/labs.icahn.mssm.edu\/greenbaum-lab\/wp-json\/wp\/v2\/pages\/2494\/revisions"}],"predecessor-version":[{"id":4618,"href":"https:\/\/labs.icahn.mssm.edu\/greenbaum-lab\/wp-json\/wp\/v2\/pages\/2494\/revisions\/4618"}],"wp:attachment":[{"href":"https:\/\/labs.icahn.mssm.edu\/greenbaum-lab\/wp-json\/wp\/v2\/media?parent=2494"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}